Job Description P45562 Confidence 99.96% Date Thu Jan 5 12:03:15 GMT 2012 Rank 4 Aligned Residues 384 % Identity 12% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	V	M	S	F	L	Q	Y	F	I	W	G	S	W	L	V	T	L	G	S	Y	M	I	N	T	L	H	F	T	G	A	N	V	G	M	V	Y	S	S	K	G	I	A	A	I	I	M	P	G	I	M	G	I	I	A	D	K	W	L	R	A	E	R	A	Y	M	L	C	H	L	V	C	A	G	V	L	F	Y	A
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	.	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A	L	F	W
Template Known Secondary structure																							.							T	T			T	T													T	T											S																			T
Template Predicted Secondary structure																							.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		87	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		A	S	V	.	.	T	D	P	D	M	M	F	W	V	M	L	V	N	A	M	A	F	M	P	T	I	A	L	S	N	S	V	S	Y	S	C	L	A	Q	A	G	L	D	P	V	T	A	F	P	P	I	R	V	F	G	T	V	G	F	I	V	A	M	W	A	V	S	L	L	H	L	E	L	S	S	L	Q	L	Y	I
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S	Q	D	V	L
Template Known Secondary structure						T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	G	A	S	L	L	L	S	A	Y	A	L	T	L	P	K	I	P	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	K	A	T	T	S	L	A	S	K	L	G	L	D	A	F	V	L	F	K	N	P	R	M	A	I	F	F	L	F	A	M	M	L	G	A	V	L	Q
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F	C
Template Known Secondary structure				S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	N	V	F	G	N	P	F	L	H	D	F	A	R	N	P	E	F	A	D	S	F	V	V	K	Y	P	S	I	L	L	S	V	S	Q	M	A	E	V	G	F	I	L	T	I	P	F	F	L	K	R	F	G	I	K	T	V	M	L	M	S	M	V	A	W	T	L	R	F	G	F	F	A	Y	G	D	P	S	T
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	.	.	.	.	.
Template Known Secondary structure																					S	T	T																															S																							.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	F	I	L	L	L	L	S	M	I	V	Y	G	C	A	F	D	F	F	N	I	S	G	S	V	F	V	E	Q	E	V	D	S	S	I	R	A	S	A	Q	G	L	F	M	T	M	V	N	G	V	G	A	W	V	G	S	I	L	S	G	M	A	V	D	Y	F	S	V	D	G	V	K	D	W	Q	T	I	W	L
Query Conservation
Alig confidence																																									.	.									.																				.	.	.	.	.
Template Conservation																																									.	.									.																				.	.	.	.	.
Template Sequence		A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	.	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	.	.	.	.	.	I	P	T	A	E	L
Template Known Secondary structure		S																	T	T											S	S		G	G	G					.	.							G	G	.	G																	T	S	.	.	.	.	.	S	G	G	G	G
Template Predicted Secondary structure																																									.	.									.																				.	.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410						.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	A	G	Y	A	L	F	L	A	V	I	F	F	F	G	F	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure															T	S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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