Job Description P45562 Confidence 3.75% Date Thu Jan 5 12:03:15 GMT 2012 Rank 31 Aligned Residues 418 % Identity 9% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.											.	.	.	.	.	.	.	70
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	I	A	M	R	L	K	V	M	S	F	L	Q	Y	F	I	W	G	S	W	L	V	T	L	G	S	Y	M	I	N	T	L	H	F	T	G	A	N	V	G	M	V	Y	S	S	K	G	I	A	A	I	I	M	P	G	I	M	G	I	I	A	.	.	.	.	.	.	.	.	.	.	D	K	W	L	R	A	E	R
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A	G	R	Q	H	K	I	P	F	E
Template Known Secondary structure																																		T	T	T	T	T	T																								G	G	G		T	T	S		S	S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.														.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Y	M	L	C	H	L	V	C	A	G	V	L	F	Y	A	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	D	P	D	M	M	F	W	V	M	L	V	N	A	M	A	F	M	P	T	I	A	L	S	N	S	V	S	Y	S	C	L	A	Q	A	G	L	D	P	V	T	A	F	P	P	I	R	V
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P	A	M	V	I	G	F	I	G	L
Template Known Secondary structure																												S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	T	V	G	F	I	V	A	M	W	A	V	S	L	L	H	L	E	L	S	S	L	Q	L	Y	I	A	S	G	A	S	L	L	L	S	A	Y	A	L	T	L	P	K	I	P	V	A	E	K	K	A	T	T	S	L	A	S	K	L	G	L	D	A	F	V	L	F	K	N	P	R	M	A	I	F	F	L	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F	R	L	G	F	P	V	A	A	A
Template Known Secondary structure													T	T		S	S																														T		T	T												S	S	T	T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	L	G	A	V	L	Q	I	T	N	V	F	G	N	P	F	L	H	D	F	A	R	N	P	E	F	A	D	S	F	V	V	K	Y	P	S	I	L	L	S	V	S	Q	M	A	E	V	G	F	I	L	T	I	P	F	F	L	K	R	F	G	I	K	T	V	M	L	M	S	M	V	A	W	T	L	R	F	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A	C	I
Template Known Secondary structure																T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.							.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		F	A	Y	G	D	P	S	T	T	G	F	I	L	L	L	L	.	.	.	.	.	.	S	M	I	V	Y	G	C	A	F	D	F	F	N	I	S	G	S	V	F	V	E	Q	E	V	D	S	S	I	R	A	S	A	Q	G	L	F	M	T	M	V	N	G	V	G	A	W	V	G	S	I	L	S	G	M	A	V	D	Y
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M
Template Known Secondary structure																T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	V	D	G	V	K	D	W	Q	T	I	W	L	V	F	A	G	Y	A	L	F	L	A	V	I	F	F	F	G	F	K	Y	N	H	D	P	E	K	I	K	H	R	A	V	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H	L
Template Known Secondary structure				S	S	S			S																					T	G	G	G	S	T	T	T			S	S		T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.