Job Description P0AF56 Confidence 94.63% Date Thu Jan 5 11:25:16 GMT 2012 Rank 57 Aligned Residues 198 % Identity 10% Template c3qkyA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfio; PDBTitle: crystal structure of rhodothermus marinus bamd Resolution 2.15 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence		I	A	L	M	L	F	L	T	F	F	A	H	A	N	D	S	E	P	G	S	Q	Y	L	K	A	A	E	A	G	D	.	.	.	.	.	R	R	A	Q	Y	F	L	A	D	S	W	F	S	S	G	D	L	S	K	A	E	Y	W	A	Q	K	A	A	D	S	G	D	A	D	A	C	A	L	L	A	Q	I	K	I	T
Query Conservation																																.	.	.	.	.
Alig confidence																																.	.	.	.	.																																													.
Template Conservation																																																																																	.
Template Sequence		E	A	F	E	R	A	M	E	F	Y	N	Q	G	K	Y	D	R	A	I	E	Y	F	K	A	V	F	T	Y	G	R	T	H	E	W	A	A	D	A	Q	F	Y	L	A	R	A	Y	Y	Q	N	K	E	Y	L	L	A	A	S	E	Y	E	R	F	I	Q	I	Y	Q	I	D	P	R	V	P	Q	A	E	Y	E	R	.
Template Known Secondary structure													T	T													G	G	G		S		S	T	T															T	T																	T	T		T	T									.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	V	S	L	D	Y	P	Q	A	K	V	L	A	E	K	A	A	Q	A	G	S	K	E	G	E	V	T	L	A	H	I	L	V	N	T	Q	A	G	K	P	D	Y	P	K	A	I	S	L	L	E	N	A	S	E	D	L	E	N	D	S	A	V	D	A	Q	M	L	L	G	L	I	Y	A	N	G	V	G	I	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	M	C	Y	Y	K	L	S	P	P	Y	E	L	D	Q	T	D	T	R	K	A	I	E	A	F	Q	L	F	I	D	R	Y	P	N	H	E	L	V	D	D	A	T	Q	K	I	R	E	L	R	A	K	L	A	R	K	Q	Y	E	A	A	R	L	Y	E	R	R	E	L	Y	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.											T	T	S																				T	T		T	T																													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		A	D	D	D	K	A	T	W	Y	F	K	R	S	S	A	I	S	R	T	G	Y	S	E	Y	W	A	G	M	M	F	.	.	.	.	L	N	G	E	E	G	F	I	E	K	N	K	Q	K	A	L	H	W	L	N	L	S	C	M
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence		A	A	A	V	T	Y	E	A	V	F	D	A	Y	P	D	T	P	W	A	D	D	A	L	V	G	A	M	R	A	Y	I	A	Y	A	E	Q	S	V	R	A	R	Q	P	E	R	Y	R	R	A	V	E	L	Y	E	R	L	L	Q
Template Known Secondary structure															T	T	S	T	T																		T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions