Job Description P0AF56 Confidence 97.81% Date Thu Jan 5 11:25:16 GMT 2012 Rank 10 Aligned Residues 216 % Identity 11% Template c3cvpA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:peroxisome targeting signal 1 receptor pex5; PDBTitle: structure of peroxisomal targeting signal 1 (pts1) binding2 domain of trypanosoma brucei peroxin 5 (tbpex5)complexed3 to pts1 peptide (10-skl) Resolution 2.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		A	L	M	L	F	L	T	F	F	A	H	A	N	D	S	E	P	G	S	Q	Y	L	K	A	A	E	A	G	.	.	D	R	R	A	Q	Y	F	L	A	D	S	W	F	S	S	G	D	L	S	K	A	E	Y	W	A	Q	K	A	A	D	S	G	D	A	D	A	C	A	L	L	A	Q	I	K	I	T	N	P	V	S
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		P	M	E	E	G	L	S	M	L	K	L	A	N	L	A	E	A	A	L	A	F	E	A	V	C	Q	A	A	P	E	R	E	E	A	W	R	S	L	G	L	T	Q	A	E	N	E	K	D	G	L	A	I	I	A	L	N	H	A	R	M	L	D	P	K	D	I	A	V	H	A	A	L	A	V	S	H	T	N	E	H
Template Known Secondary structure												T	T																	T	T															T	T																	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																					.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	Y	P	Q	A	K	V	L	A	E	K	A	A	Q	A	G	S	K	E	G	E	V	T	L	A	H	I	L	V	N	T	Q	A	G	K	P	D	Y	P	K	A	I	S	L	L	E	N	A	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	E	N	D	S	A	V	D
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	N	A	A	L	A	S	L	R	A	W	L	L	S	Q	P	Q	Y	E	Q	F	F	F	A	A	P	N	E	Y	R	E	C	R	T	L	L	H	A	A	L	E	M	N	P	N	D	A	Q	L	H	A	S	L	G	V	L	Y	N	L	S	N	N	Y	D	S	A	A	A	N	L	R	R	A	V	E	L	R	P	D
Template Known Secondary structure																T	S	T	T	T					T	T	S																		S	T	T															T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		A	Q	M	L	L	G	L	I	Y	A	N	G	V	G	I	K	A	D	D	D	K	A	T	W	Y	F	K	R	S	S	A	I	S	R	T	G	Y	S	E	Y	W	A	G	M	M	F	L	N	G	E	E	G	F	I	E	K	N	K	Q	K	A	L	H	W	L	N	L	S	C	M	E	G	.	F	D	T	G	C	E	E
Query Conservation																																																																										.
Alig confidence																																																	.	.	.	.	.	.																				.
Template Conservation																																																	.	.	.	.	.	.
Template Sequence		D	A	Q	L	W	N	K	L	G	A	T	L	A	N	G	N	R	P	Q	E	A	L	D	A	Y	N	R	A	L	D	I	N	P	G	Y	V	R	V	M	Y	N	M	A	V	S	Y	S	.	.	.	.	.	.	N	M	S	Q	Y	D	L	A	A	K	Q	L	V	R	A	I	Y	M	Q	V	T	R	S	M	W	D	F
Template Known Secondary structure																T	T																	T	T														.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.							580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
		223	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	K	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	M	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		620	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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