Job Description P0AF56 Confidence 96.93% Date Thu Jan 5 11:25:16 GMT 2012 Rank 23 Aligned Residues 215 % Identity 10% Template c2xpiA_ PDB info PDB header:cell cycle Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9; PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1 Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		I	I	A	L	M	L	F	L	T	F	F	A	H	A	N	D	S	E	P	G	S	Q	Y	L	K	A	A	E	.	.	A	G	D	R	R	A	Q	Y	F	L	A	D	S	W	F	S	S	G	D	L	S	K	A	E	Y	W	A	Q	K	A	A	D	S	G	D	A	D	A	C	A	L	L	A	Q	I	K	I	T	N	P
Query Conservation																														.	.
Alig confidence																														.	.																																																.
Template Conservation																																																																															.
Template Sequence		V	T	W	L	A	V	G	I	Y	Y	L	C	V	N	K	I	S	E	A	R	R	Y	F	S	K	S	S	T	M	D	P	Q	F	G	P	A	W	I	G	F	A	H	S	F	A	I	E	G	E	H	D	Q	A	I	S	A	Y	T	T	A	A	R	L	F	Q	G	T	H	L	P	Y	L	F	L	G	M	Q	.	H	M
Template Known Secondary structure														T	T																	T	T																T															T	T	T	T		S										.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	L	D	Y	P	Q	A	K	V	L	A	E	K	A	A	Q	A	G	S	K	E	G	E	V	T	L	A	H	I	L	V	N	T	Q	A	G	K	P	D	Y	P	K	A	I	S	L	L	E	N	A	S	E	D	L	E	N	D	S	A	V	D	A	Q	M	L	L	G	L	I	Y	A	N	G	V	G	I	K	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	G	N	I	L	L	A	N	E	Y	L	Q	S	S	Y	A	L	F	Q	Y	D	P	L	L	L	N	E	L	G	V	V	A	F	N	K	S	D	M	Q	T	A	I	N	H	F	Q	N	A	L	L	L	V	K	K	T	Q	S	N	E	K	P	W	A	A	T	W	A	N	L	G	H	A	Y	R	K	L	K	M	Y
Template Known Secondary structure				T																																	T	T																			S				S	G	G	G														T	T
Template Predicted Secondary structure
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		D	D	K	A	T	W	Y	F	K	R	S	S	A	I	S	R	T	G	Y	S	E	Y	W	A	G	M	M	F	L	N	G	E	E	G	F	I	E	K	N	K	Q	K	A	L	H	W	L	N	L	S	C	M	E	.	.	G	F	D	T	G	C	E	E	F	E	K
Query Conservation																																																							.	.
Alig confidence																															.	.	.	.	.	.																			.	.
Template Conservation																															.	.	.	.	.	.
Template Sequence		D	A	A	I	D	A	L	N	Q	G	L	L	L	S	T	N	D	A	N	V	H	T	A	I	A	L	V	Y	L	.	.	.	.	.	.	H	K	K	I	P	G	L	A	I	T	H	L	H	E	S	L	A	I	S	P	N	E	I	M	A	S	D	L	L	K	R
Template Known Secondary structure															S	S															.	.	.	.	.	.		T	T																	T	T
Template Predicted Secondary structure																															.	.	.	.	.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.							.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions