Job Description P0AF56 Confidence 95.38% Date Thu Jan 5 11:25:16 GMT 2012 Rank 49 Aligned Residues 139 % Identity 15% Template c2r5sB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633 Resolution 2.14 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		A	L	M	L	F	L	T	F	F	A	H	A	N	D	S	E	P	G	S	Q	Y	L	K	A	.	.	A	E	A	G	D	R	R	A	Q	Y	F	L	A	D	S	W	F	S	S	G	D	L	S	K	A	E	Y	W	A	Q	K	A	A	D	S	G	D	A	D	A	C	A	L	L	A	Q	I	K	I	T	N	P	V	S
Query Conservation																										.	.
Alig confidence																										.	.																																													.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	K	Q	V	S	E	L	L	Q	Q	G	E	H	A	Q	A	L	N	V	I	Q	T	L	S	D	E	L	Q	S	R	G	D	V	K	L	A	K	A	D	C	L	L	E	T	K	Q	F	E	L	A	Q	E	L	L	A	T	I	P	L	E	Y	Q	D	N	S	Y	K	S	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T												S						T	S														T	T										T	T			G	G	G									.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	Y	P	Q	A	K	V	L	A	E	K	A	A	Q	A	G	S	K	E	G	E	V	T	L	A	H	I	L	V	N	T	Q	A	G	K	P	D	Y	P	K	A	I	S	L	L	E	N	A	S	E	D	L	E	N	D	S	A	V	D	A	Q	M	L	L	G	L	I	Y	A	N	G	V	G	I	K	A	D	D	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	K	L	E	L	H	Q	Q	A	A	E	S	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																				187	.	.	190	.	.	.	.	.	.	.	.	.	200
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.
Query SS confidence																																																					.	.	.	.
Query Sequence		K	A	T	W	Y	F	K	R	S	S	A	I	S	R	T	G	Y	S	E	Y	W	A	G	M	M	F	L	N	G	E	E	G	F	I	E	K	N	K	Q	K	A	L	H	W	L	N	L	S	C	M	E	.	.	.	.	G	F	D	T	G	C	E	E	F	E	K	L
Query Conservation																																																					.	.	.	.
Alig confidence																													.	.	.	.	.	.																			.	.	.	.
Template Conservation																													.	.	.	.	.	.
Template Sequence		E	L	K	R	L	E	Q	E	L	A	A	N	P	D	N	F	E	L	A	C	E	L	A	V	Q	Y	N	.	.	.	.	.	.	Q	V	G	R	D	E	E	A	L	E	L	L	W	N	I	L	K	V	N	L	G	A	Q	D	G	E	V	K	K	T	F	X	D	I
Template Known Secondary structure														T	T														.	.	.	.	.	.		T	T														T	T		T	T	T	T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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