Job Description P0AF56 Confidence 97.97% Date Thu Jan 5 11:25:16 GMT 2012 Rank 8 Aligned Residues 197 % Identity 13% Template c1fchB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor; PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5 Resolution 2.20 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																												.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	M	L	F	L	T	F	F	A	H	A	N	D	S	E	P	G	S	Q	Y	L	K	A	A	E	.	.	A	G	D	R	R	A	Q	Y	F	L	A	D	S	W	F	S	S	G	D	L	S	K	A	E	Y	W	A	Q	K	A	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	E	E	G	L	R	R	L	Q	E	G	D	L	P	N	A	V	L	L	F	E	A	A	V	Q	Q	D	P	K	H	M	E	A	W	Q	Y	L	G	T	T	Q	A	E	N	E	Q	E	L	L	A	I	S	A	L	R	R	C	L	E	L	K	P	D	N	Q	T	A	L	M	A	L	A	V	S	F	T	N	E	S
Template Known Secondary structure												T	T																	T	T															T	T																	T	T																T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
																64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	D	A	D	A	C	A	L	L	A	Q	I	K	I	T	N	P	V	S	L	D	Y	P	Q	A	K	V	L	A	E	K	A	A	Q	A	G	S	K	E	G	E	V	T	L	A	H	I	L	V	N	T	Q	A	G	K	P	D	Y	P	K	A	I	S	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	R	Q	A	C	E	I	L	R	D	W	L	R	Y	T	P	A	Y	A	H	L	V	T	P	R	I	L	G	S	L	L	S	D	S	L	F	L	E	V	K	E	L	F	L	A	A	V	R	L	D	P	T	S	I	D	P	D	V	Q	C	G	L	G	V	L	F	N	L	S	G	E	Y	D	K	A	V	D	C	F
Template Known Secondary structure																T	S	T	T	T	G	G	G	S					S																								T	T	S																	T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	A	S	E	D	L	E	N	D	S	A	V	D	A	Q	M	L	L	G	L	I	Y	A	N	G	V	G	I	K	A	D	D	D	K	A	T	W	Y	F	K	R	S	S	A	I	S	R	T	G	Y	S	E	Y	W	A	G	M	M	F	L	N	G	E	E	G	F	I	E	K	N	K	Q	K	A	L	H	W	L	N
Query Conservation
Alig confidence																																										.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		T	A	A	L	S	V	R	P	N	D	Y	L	L	W	N	K	L	G	A	T	L	A	N	G	N	Q	S	E	E	A	V	A	A	Y	R	R	A	L	E	L	.	.	.	.	.	Q	P	G	Y	I	R	S	R	Y	N	L	G	I	S	C	I	.	.	.	.	.	.	N	L	G	A	H	R	E	A	V	E	H	F	L
Template Known Secondary structure						T	T		T	T															T	T																.	.	.	.	.		T	T														.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																										.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.						.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530							.	.	.	.	.	.	.	.	.	540	.	.	.
		210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	C	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	L	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		544	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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