Return to main results Retrieve Phyre Job Id

Job DescriptionP76543
Confidence6.88%DateThu Jan 5 12:24:18 GMT 2012
Rank13Aligned Residues39
% Identity31%Templated1p6ra_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Penicillinase repressor
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   166...170.........180.........190 .........200....
Predicted Secondary structure 

....










Query SS confidence 
























. . . .













Query Sequence  LSKNTVKKCLDRLVNHFKLVERTEG. . . . YIPGSAERECNEYQ
Query Conservation 
























....













Alig confidence 
























....













Template Conservation     


 
 
 

  

 
     

   
 
 
  


   
Template Sequence  WSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDESDYIEVK
Template Known Secondary structure 

TTSTTS
SSSTT



Template Predicted Secondary structure 









Template SS confidence 










































   3940.........50.........60.........70.........80.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions