Job Description P75678 Confidence 97.94% Date Thu Jan 5 12:12:57 GMT 2012 Rank 289 Aligned Residues 149 % Identity 12% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.																	.	.	.	20	.	.	.	.	.	.	.	.	.	30							.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																												.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																												.	.	.
Query Sequence		N	S	E	G	L	K	S	F	Q	Q	S	L	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	Q	W	V	S	E	R	L	L	Q	Q	I	N	.	.	.	.	.	.	Q	L	T	N	Y	E	P	V	I	G	I	M	G	K	T	G	V	G	K	S	S	L	C	N	A	L	F	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																												.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																												.	.	.
Template Conservation
Template Sequence		N	V	R	L	V	L	Q	L	T	R	E	I	Q	R	R	A	L	E	E	K	P	P	A	G	I	S	K	K	E	H	I	I	K	I	V	Y	E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F
Template Known Secondary structure																								T	T																			T	T	S	S								S	S	S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
																												58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80							.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	D	I	S	P	V	S	D	V	A	A	C	T	R	E	P	L	R	F	R	L	Q	.	.	.	.	.	.	V	G	D	R	Y	I	T	L	M	D	L	P	G	V	G	E	S	G	A	R	D	T	E	Y	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M
Template Known Secondary structure			T	T	T											S	S	T											G	G	G	T							T	T																		T	T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Y	R	E	Q	L	P	R	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	T	V	D	E	H	F	Y	H	Q	V	I	G	E	V	Y	R	H	K	V	L	F	V	I	S	Q	S	D
Query Conservation
Alig confidence										.																.	.																				.	.
Template Conservation										.																.	.																				.	.
Template Sequence		K	Q	I	S	N	V	I	H	.	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	.	.	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	.	.	T	K	L	D
Template Known Secondary structure										.		S								G	G	G	G	G	G	.	.											S		T	T						.	.				S
Template Predicted Secondary structure										.																.	.																				.	.
Template SS confidence
		205	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions