 |
Job Description | P77667 | Confidence | 8.52% | Date | Thu Jan 5 12:31:28 GMT 2012 |
Rank | 41 | Aligned Residues | 39 |
% Identity | 23% | Template | c1zc1A_ |
PDB info |
PDB header:protein turnover | Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; |
PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites
|
Resolution | UNK |
|
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | A | K | L | F | V | P | L | Q | A | M | P | F | I | D | G | T | E | V | D | F | V | R | E | G | L | N | Q | I | F | K | F | H | N | P | K | A | Q | N | E | C | G | C | G |
Query Conservation |   |
|   |   |
|   |
|
|   |   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |
|   |
|
|   |
|   |
|
|
|
|   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|
|
|
|   |
|   |   |
|   |   |   |   |
|   |   |
|
|
| . | . | . | . | . |
|   |
|   |
|   |   |   |   |   |   |
|
|   |
|
Template Sequence |   |
G | G | K | I | F | L | P | P | S | A | L | S | K | L | S | M | L | N | I | R | Y | P | M | L | . |
. |
. |
. |
. |
F | K | L | T | A | N | E | T | G | R | V | T | H | G | G |
Template Known Secondary structure |   |
S | S |  |  |  |  |
|  |  |  |  |  |  |  |  |  | T | T |
|
| S | S |
|
| . | . | . | . | . |  |  |  |  |
| T | T | T |
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  | . | . | . | . | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
45 | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|