Return to main results Retrieve Phyre Job Id

Job DescriptionP77667
Confidence8.52%DateThu Jan 5 12:31:28 GMT 2012
Rank41Aligned Residues39
% Identity23%Templatec1zc1A_
PDB info PDB header:protein turnoverChain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80.........90.........100.........110.......
Predicted Secondary structure 



















Query SS confidence 











































Query Sequence  GAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCG
Query Conservation 
  
 

      
 
  


     
 

 
 



   



Alig confidence 























.....














Template Conservation 



 



 
  
    
  


.....
 
 
      

 
Template Sequence  GGKIFLPPSALSKLSMLNIRYPML. . . . . FKLTANETGRVTHGG
Template Known Secondary structure  SS
TT

SS

.....
TTT

Template Predicted Secondary structure 








.....




Template SS confidence 











































   45....50.........60........ .70.........80...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions