 |
Job Description | Q2EES3 | Confidence | 98.70% | Date | Thu Jan 5 12:33:48 GMT 2012 |
Rank | 23 | Aligned Residues | 96 |
% Identity | 20% | Template | c3degC_ |
PDB info |
PDB header:ribosome | Chain: C: PDB Molecule:gtp-binding protein lepa; |
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
|
Resolution | NULL Å |
|
 |
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
. | 90 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
E | Y | G | A | D | T | L | P | D | R | Y | R | S | D | G | R | C | L | L | F | W | Q | Q | A | G | I | S | A | L | K | Q | E | L | E | V | K | T | P | Y | R | A | M | N | H | P | V | I | G | V | V | T | K | A | D | L | A | S | M | E | Q | I | S | L | V | K | S | W | L | R | E | A | . |
. |
. |
G | A | H | N | V | L |
Query Conservation |   |
  |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |
|
|
|   |   |   |   |
|
|   |
| . | . | . |
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|   |   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|   |   |
|
|   |   | . | . |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|   | . |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|
Template Sequence |   |
D | F | S | Y | E | V | S | R | S | L | A | A | C | E | G | A | L | L | V | V | D | A | G | Q | G | V | E | A | . |
. |
Q | T | L | A | N | C | Y | T | A | M | E | M | D | L | E | V | V | P | V | L | N | K | I | D | L | . |
P | A | A | D | P | E | R | V | A | E | E | I | E | D | I | V | G | I | D | A | T | D | A | V |
Template Known Secondary structure |   |
T | T |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  |  | T | T | T |
|
|
| T | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |
| T | T | S | . | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
| T | T |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | |
|
. | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . |
  |
  |   |
95 | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | S | A | V | N | N | N | G | V | T | E | L | F | A | L | L | H | T | E | E | G |
Query Conservation |   |
  |
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |
|
Template Sequence |   |
R | C | S | A | K | T | G | V | G | V | Q | D | V | L | E | R | L | V | R | D | I | P |
Template Known Secondary structure |   |
 |
|
| T | T | T |
| T | T |  |  |  |  |  |  |  |  |  |  |  | S |
|
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|