Return to main results Retrieve Phyre Job Id

Job DescriptionP42641
Confidence99.42%DateThu Jan 5 12:02:02 GMT 2012
Rank173Aligned Residues162
% Identity17%Templated1c1ya_
SCOP infoP-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   162.......170.........180.........190.........200.........210.........220.........230.........240.
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  VGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVL
Query Conservation 




 









 

  
  

  




 
  
 
       
 
 





  
     

  






   
Alig confidence 





























































.......










Template Conservation 
 


   






 
     
                                       .......           
Template Sequence  LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM. . . . . . . RDLYMKNGQGF
Template Known Secondary structure 
STTSS




S



SSSS

SS
SSTT.......
S
Template Predicted Secondary structure 
































.......



Template SS confidence 















































































   6...10.........20.........30.........40.........50.........60....... ..70........
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  LHLIDIDPIDGTDPVENARIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAKAIAEALGWEDKYYLISAASGLGV
Query Conservation 
 


               
  

      
  
  





 

            
         

 


  
 

Alig confidence 



























....















































Template Conservation                              ....                                      
 




  
Template Sequence  ALVYSITAQSTFNDLQDLREQILRVKDT. . . . EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV
Template Known Secondary structure  TT
T

....S



TT
GGG

S
TTS

BTTTTBS
Template Predicted Secondary structure 
















....






















Template SS confidence 















































































   7980.........90.........100...... ...110.........120.........130.........140.........150....
 
   322.......330....
Predicted Secondary structure 
Query SS confidence 












Query Sequence  KDLCWDVMTFIIE
Query Conservation 
 
   
   
 
Alig confidence 












Template Conservation   
 
  
   
 
Template Sequence  NEIFYDLVRQINR
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 












   155....160.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions