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Job DescriptionP42641
Confidence99.41%DateThu Jan 5 12:02:02 GMT 2012
Rank184Aligned Residues150
% Identity21%Templatec3mmpC_
PDB info PDB header:transferaseChain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  VGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVL
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Template Sequence  VGTIGHVDHGKTTLTAAITTV. . . LAKTYGGTSHVEYDT. . . . PTRHYAHVDCPG. . . . . . . HADYVKNMITGAAQMDGA
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   1014.....1020.........1030.... .....1040......... 1050.........1060. ........1070.........
 
   242.......250.........260.........270....... ..280.........290........ .300..... ....310...
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Query Sequence  LHLIDIDPIDGTDPVENARIIISELEKYSQDLATKP. RWLVFNKIDLLDKVEAEEKAK. AIAEALG. . . . . . WEDKYYLI
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Template Sequence  ILVVAATDGPMPQTREHILLGRQ. . . . . . . . . VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRG
Template Known Secondary structure  TTT


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   1102.......1110.........1120.... .....1130.........1140.........1150.........1160.........1170..
 
   314.... .320.........330....
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Query Sequence  SAASG. . . . . . . . LGVKDLCWDVMTFIIE
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Template Sequence  SALKALEGDAEWEAKILELAGFLDSYIPE
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   1173......1180.........1190.........1200.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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