Job Description P42641 Confidence 99.38% Date Thu Jan 5 12:02:02 GMT 2012 Rank 199 Aligned Residues 169 % Identity 21% Template c3izq1_ PDB info PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome Resolution 9.50 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																																.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	A	D	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																																															.
Template Sequence		F	V	V	L	G	H	V	D	A	G	K	S	T	L	M	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	E	S	E	T	M	G	K	S	S	F	K	F	A	W	I	M	D	Q	T	N	E	E	R	E	R	G	V	T	V	S	I	C	T	S	H	F	S	T	H	R	A	N	.	F	T
Template Known Secondary structure								S	S	S											S		S	S		S												S	S		S	S	S	S			S	S	S												T	T	T			S		S							S	S			.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.																												.
Query SS confidence																																										.	.	.	.	.	.	.																												.
Query Sequence		V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L	L	H	L	I	D	I	D	P	I	.	.	.	.	.	.	.	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	.	R	W	L	V	F
Query Conservation																																										.	.	.	.	.	.	.																												.
Alig confidence								.	.	.	.	.	.	.																												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.					.
Template Conservation								.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	D	A	P	G	.	.	.	.	.	.	.	H	R	D	F	V	P	N	A	I	M	G	I	S	Q	A	D	M	A	I	L	C	V	D	C	S	T	N	A	F	E	S	G	F	D	L	D	G	Q	T	K	E	H	M	L	L	A	S	S	.	.	.	.	.	.	.	.	.	L	G	I	H	N	L	I	I	A	M
Template Known Secondary structure							S	.	.	.	.	.	.	.	S	S							T	T	T	S	S			S									S						T	T			T	T	S											T	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.								.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.										.	.	.	.	.	.	.	310	.	.
		283	.	.	.	.	.	.	290	.	.						.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.																.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.														.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.														.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	I	D	L	L	D	K	V	E	.	.	.	.	.	A	E	E	K	A	K	A	I	A	E	A	L	G	.	.	.	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	V	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q
Query Conservation												.	.	.	.	.														.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.														.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	M	D	N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D	I	G	F	F	E	D	N	I	N	W	V	P	I	S	G	F	S	G	E	G	V	Y	K	I	E	Y	T	D	E	V	R	Q	W	Y	N	G	P	N	L	M	S	T	L	E	N	A	A	F	K	I	S	K	E	N
Template Known Secondary structure				T	T	T	T	T	T																				T			G	G	G								T	T	T		T	T	T	S	S		T	T	S		T	T			S			S								T	T	S							S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	E	A	K	Q	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	I	N	K	D	D	P
Template Known Secondary structure		S			S			S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions