Job Description P42641 Confidence 99.30% Date Thu Jan 5 12:02:02 GMT 2012 Rank 222 Aligned Residues 205 % Identity 17% Template c3dpuA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab family protein; PDBTitle: roccor domain tandem of rab family protein (roco) Resolution 2.90 Å

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R
Query Conservation
Alig confidence																																										.	.																										.	.	.	.			.	.	.
Template Conservation																																										.	.																										.	.	.	.			.	.	.
Template Sequence		I	K	V	H	L	I	G	D	G	M	A	G	K	T	S	L	L	K	Q	L	I	G	G	L	N	V	V	T	K	Q	A	P	N	I	K	G	L	E	N	D	.	.	D	E	L	K	E	C	L	F	H	F	W	D	F	G	G	Q	E	I	M	H	A	S	H	Q	F	.	.	.	.	F	M	.	.	.	T	R	S	S
Template Known Secondary structure								S	S	S		S	S																			G	G	G	S	G	G	G	T	T		.	.	S	T	T	T	T										S			T	T	T	T	T				.	.	.	.			.	.	.		S	S
Template Predicted Secondary structure																																										.	.																										.	.	.	.			.	.	.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.					.	.				520	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		V	L	L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	A	L	G	W	E	D	.	K	Y	Y	L	I	S	A	A	S	G
Query Conservation																																																																							.
Alig confidence													.	.	.	.	.	.	.	.	.																																					.	.												.
Template Conservation													.	.	.	.	.	.	.	.	.																																					.	.
Template Sequence		V	Y	M	L	L	L	D	S	R	T	D	.	.	.	.	.	.	.	.	.	S	N	K	H	Y	W	L	R	H	I	E	K	Y	G	G	K	S	P	V	I	V	V	M	N	K	I	D	E	N	P	S	Y	N	I	E	Q	.	.	K	K	I	N	E	R	F	P	A	I	E	N	R	F	H	R	I	S	C	V	E	S
Template Known Secondary structure									G	G	G	G	.	.	.	.	.	.	.	.	.	G	G												S	S	S										T	T	T		T	T						.	.								G	G	G	T	T									T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																																					.	.
Template SS confidence
		535	.	.	.	.	540	.	.	.	.	.										.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.			.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A	E	E	A	K	Q	P	E	K	V	E	F	M	W	D	D	Y	H	R	Q	Q	L	E	E	I	A	E	E	D	D	E	D	W	D	D	D	W	D	E	D	D	E	E	G	V	E	F	I	Y	K
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	I	A	K	S	L	K	S	A	V	L	H	P	D	S	I	Y	G	T	P	L	A	P	S	W	I	K	V	K	E	K	L	V	E	A	T	T	A	Q	R	Y	L	N	R	T	E	V	E	K	I	C	N	D	S	G	I	T	D	P	G	E	R	K	T	L	L	G
Template Known Secondary structure		.	.	.	.	.										T		T	T	S	G	G	G			B																		S	S														T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions