Job Description P42641 Confidence 99.21% Date Thu Jan 5 12:02:02 GMT 2012 Rank 239 Aligned Residues 155 % Identity 12% Template c3cpjB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi Resolution 2.35 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L
Query Conservation
Alig confidence																								.	.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.																																							.	.	.	.	.	.	.
Template Sequence		I	V	L	I	G	D	S	G	V	G	K	S	N	L	L	S	R	F	T	K	N	E	.	.	.	.	.	F	N	M	G	V	E	F	A	T	R	T	L	E	I	E	G	K	R	I	K	A	Q	I	W	D	T	A	G	Q	E	R	Y	R	A	I	T	S	A	.	.	.	.	.	.	.	Y	Y	R	G	A	V	G	A
Template Known Secondary structure						S		T	T	S	S													.	.	.	.	.						S									T	T											T	T	T	T	T	T	T				G	G	.	.	.	.	.	.	.	G	T	T	T
Template Predicted Secondary structure																								.	.	.	.	.																																							.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	A	L	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	V
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																																																	.												.
Template Conservation									.	.	.	.	.	.	.	.																																																	.												.
Template Sequence		L	I	V	Y	D	S	K	.	.	.	.	.	.	.	.	S	S	S	Y	E	N	C	N	H	W	L	S	E	L	R	E	N	A	D	V	A	V	G	L	I	G	N	K	S	D	L	A	H	L	R	A	V	P	T	E	E	S	K	T	F	A	Q	E	.	N	Q	L	L	F	T	E	T	S	A	L	.	S	E	N	V
Template Known Secondary structure									.	.	.	.	.	.	.	.																													G	G	G	G	G	G			S												.	T	T										.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																																	.												.
Template SS confidence
		90	.	.	.	.	.	.									.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.		.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	A	F	E	E	L	I	N	T	I	Y	Q	K	V	P	T
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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