Job Description P42641 Confidence 99.32% Date Thu Jan 5 12:02:02 GMT 2012 Rank 218 Aligned Residues 164 % Identity 17% Template c3clvA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab5 protein, putative; PDBTitle: crystal structure of rab5a from plasmodium falciparum,2 pfb0500c Resolution 1.89 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	L	L	G	E	S	S	V	G	K	S	S	I	V	L	R	L	T	K	D	T	F	H	E	N	T	N	T	T	I	G	A	S	F	C	T	Y	V	V	N	L	N	D	N	Y	N	E	N	L	C	N	I	K	F	D	I	W	D	T	A	G	Q	E	R	Y	A	S	I	V	P	L	Y	Y	R	G	A	T	C	A
Template Known Secondary structure								T	T	S	S											S				S	S						S										T	T					T	T	T											T	T	G	G	G		T	T	T						T	T		S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	A	L	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	V
Query Conservation
Alig confidence										.	.	.	.	.	.	.																																																.	.	.
Template Conservation										.	.	.	.	.	.	.																																																.	.	.
Template Sequence		I	V	V	F	D	I	S	N	.	.	.	.	.	.	.	S	N	T	L	D	R	A	K	T	W	V	N	Q	L	K	I	S	S	N	Y	I	I	I	L	V	A	N	K	I	D	K	N	F	Q	V	D	I	L	E	V	Q	K	Y	A	Q	D	N	.	.	.	N	L	L	F	I	Q	T	S	A	K	T	G	T	N	I
Template Known Secondary structure							T	T		.	.	.	.	.	.	.																		S											T	T					S												T	.	.	.	T								T	T	T		T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.																																																.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		322	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	L	C	W	D	V	M	T	F	I	I	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	I	F	Y	M	L	A	E	E	I	Y	K	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions