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Job DescriptionP42641
Confidence99.39%DateThu Jan 5 12:02:02 GMT 2012
Rank193Aligned Residues149
% Identity19%Templatec3agqA_
PDB info PDB header:translation,transferaseChain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii
Resolution3.22 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  VGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVL
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Template Sequence  VGTIGHVDHGKTTLTAAITTV. . . LAKTYGGTSHVEYD. . . . TPTRHYAHVDCPG. . . . . . . HADYVKNMITGAAQMDGA
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   299300.........310......... 320.........330... ......340...... ...350.........360....
 
   242.......250.........260.........270....... ..280.........290.........300..... ....310...
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Query Sequence  LHLIDIDPIDGTDPVENARIIISELEKYSQDLATKP. RWLVFNKIDLLDKVEAEEKAKAIAEALG. . . . . . . WEDKYYLI
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Template Sequence  ILVVAATDGPMPQTREHILLGRQ. . . . . . . . . VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRG
Template Known Secondary structure  TTT
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   387..390.........400......... 410.........420.........430.........440.........450.......
 
   314.... .320.........330...
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Query Sequence  SAASG. LGVKDLCWDVMTFII
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Template Sequence  SALKALEGDAEWEAKILELAG
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   458.460.........470........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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