Job Description P42641 Confidence 99.86% Date Thu Jan 5 12:02:02 GMT 2012 Rank 31 Aligned Residues 186 % Identity 20% Template c2wwwB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein Resolution 2.64 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.							.																					.
Query SS confidence																					.	.	.	.	.	.							.																					.
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	.	.	.	.	.	.	A	A	K	P	K	V	.	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	.	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K
Query Conservation																					.	.	.	.	.	.							.																					.
Alig confidence																					.	.	.	.	.	.							.																					.																				.	.
Template Conservation																																																																										.	.
Template Sequence		V	G	L	S	G	P	P	G	A	G	K	S	T	F	I	E	Y	F	G	K	M	L	T	E	R	G	H	K	L	S	V	L	A	V	D	T	E	L	S	R	D	M	N	A	Y	I	R	P	T	R	T	T	N	E	A	I	L	L	C	E	G	A	G	Y	D	I	I	L	I	E	T	V	.	.	G	Q	S	E	F	A
Template Known Secondary structure								T	T	S	S															T	T												S	S	S		T	T							T	T											T	T		S								.	.
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		H	L	E	R	C	R	V	L	L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	A	L	G	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	D	M	V	D	M	F	V	L	L	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	E	M	A	D	L	V	A	V	T	K	S	D	G	D	L	I	V	P	A	R	R	I	Q	A	E	Y	V	S	A	L	K	L	L	R	K	R	S	Q	V
Template Known Secondary structure				T	T	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S		S								S	T	T	S	S															T	T	S			S		S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.																										.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	V	K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A	E	E	A	K	Q	P	E	K	V	E	F	M	W	D	D	Y	H	R	Q	Q	L	E	E	I	A	E	E	D	D	E	D	W	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	K	P	K	V	I	R	I	S	A	R	S	G	E	G	I	S	E	M	W	D	K	M	K	D	F	Q	D	L	M	L	A	S	G	E	L	T	A	K	R	R	K	Q	Q	K	V	W	M	W	N	L	I	Q	E	S	V	L	E	H	F	R	T	H	P	T	V	R	E	Q
Template Known Secondary structure											T	T	T		T	T																			S																													S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions