Job Description P42641 Confidence 99.79% Date Thu Jan 5 12:02:02 GMT 2012 Rank 43 Aligned Residues 171 % Identity 17% Template c2plfA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form. Resolution 2.90 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.																												.	.	.	210	.
Predicted Secondary structure																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	A	D	.	.	.	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	F	V	V
Query Conservation																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	V	V	G	H	V	D	H	G	K	T	T	L	V	Q	A	I	T	G	I	W	T	S	K	H	S	E	E	L	K	R	G	M	T	I	K	L	G	Y	A	E	T	N	I	G	V	C	E	S	C	K	K	P	E	A	Y	V	T	E	P	S	C	K	S	C	G	S	D	D	E	P	K	F	L	R	R	I	S	F
Template Known Secondary structure							S	S	T	T	S	S	S	T	T						S	S		S	T	T		T	T	T	T	T	T				S	S												T	T	S		T	T	T	T			S	S	S			G	G	G	T			S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L	L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template Sequence		I	D	A	P	G	H	E	V	L	M	A	T	.	.	.	.	.	.	.	M	L	S	G	A	A	L	M	D	G	A	I	L	V	V	A	A	N	E	P	F	P	Q	P	Q	T	R	E	H	F	V	A	L	G	I	I	G	V	.	.	.	.	.	.	.	K	N	L	I	I	V	Q	N	K	V	D	V	V	S	K	E
Template Known Secondary structure						S	S				S	S	S	.	.	.	.	.	.	.					T	T	S		S								T	T	S		S	S														T	T		.	.	.	.	.	.	.		S								G	G	G	S
Template Predicted Secondary structure														.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.					.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		E	A	E	E	K	A	K	A	I	A	E	A	L	.	.	.	.	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	V	K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A	E	E	A	K	Q	P
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.
Template Conservation
Template Sequence		E	A	L	S	Q	Y	R	Q	I	K	Q	F	T	K	G	T	W	A	E	N	V	P	I	I	P	V	S	A	L	H	K	I	N	I	D	S	L	I	E	G	I	E	E	Y	I	K	T	P	Y	R	D	L	S	Q	K	P	V	M	L
Template Known Secondary structure												T	T	S	T	T	S	G	G	G	G							B	T	T	T	T	B	S												S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions