Return to main results Retrieve Phyre Job Id

Job DescriptionP42641
Confidence97.38%DateThu Jan 5 12:02:02 GMT 2012
Rank293Aligned Residues129
% Identity21%Templatec2og2A_
PDB info PDB header:protein transportChain: A: PDB Molecule:putative signal recognition particle receptor; PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   162.......170.........180.........190.........200.......
Predicted Secondary structure 




















..................................
Query SS confidence 













































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  VGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 




 









 

  
  

  




 
  
 
      ..................................
Alig confidence 

















........



















..................................
Template Conservation 
  


 
 




 


........
      
  
 

  
  
  
 


   
    
                  
Template Sequence  IMIVGVNGGGKTTSLGKL. . . . . . . . AHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK
Template Known Secondary structure 

TTS
........TT





S
T


SSSS

Template Predicted Secondary structure 





........

















Template SS confidence 















































































   129130.........140...... ...150.........160.........170.........180.........190.........200
 
   208.210.........220.........230....... ..240.........250.........260.........270..
Predicted Secondary structure  ..........







.....










Query SS confidence  . . . . . . . . . .





























. . . . .


































Query Sequence  . . . . . . . . . . SFVVADIPGLIEGAAEGAGLGIRFLKHLER. . . . . CRVLLHLIDIDPIDGTDPVENARIIISELEKYSQD
Query Conservation  .......... 
 
 





  
     

  






.....   

 


               
  

      
Alig confidence  ..........





























.....












..











........
Template Conservation            
 







      
  

  
           
    


 

  ..            ........
Template Sequence  AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTG. . LNMLPQAREFNE. . . . . . . .
Template Known Secondary structure  TT
S



SS

STT

SGGGG..GGG........
Template Predicted Secondary structure 
























..........
Template SS confidence 















































































   201........210.........220.........230.........240.........250........ .260.........270
 
   273......280.........290.........300.........310....
Predicted Secondary structure 



















Query SS confidence 









































Query Sequence  LATKPRWLVFNKIDLLDKVEAEEKAKAIAEALGWEDKYYLIS
Query Conservation 
  
  





 

            
         

 

Alig confidence  .



























.....







Template Conservation  .      








   
  

     .....  

  
 
Template Sequence  . VVGITGLILTKLDGSARGGCVVSVVEEL. . . . . GIPVKFIG
Template Known Secondary structure  .T


S
TT
S
T.....


Template Predicted Secondary structure  .











.....


Template SS confidence 









































   271........280.........290........ .300......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions