Job Description P42641 Confidence 96.43% Date Thu Jan 5 12:02:02 GMT 2012 Rank 303 Aligned Residues 169 % Identity 22% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.																					190	.	.	.	.	.	.	.	.	.	200	.	.	.										.	.
Predicted Secondary structure																					.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	.	.	.	.	.	.	.	A	A	K	P	K	V	A	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	T	T	L	V	P	S	L	G	V	V	R	M	.	.	.	.	.	.	.	.	.	D	N
Query Conservation																					.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K
Template Known Secondary structure							S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T							S	S				T	T													T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L	L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I
Query Conservation
Alig confidence																																	.														.	.													.	.	.	.	.	.	.	.	.
Template Conservation																																	.														.	.													.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	.	P	V	E	T	L	F	V	V	D	A	M	T	G	.	.	Q	D	A	A	N	T	A	K	A	F	N	E	.	.	.	.	.	.	.	.	.	A	L	P	L	T	G	V	V	L	T	K	V
Template Known Secondary structure		T		S											S	S																	.		S								T	T	T	G	.	.	G	G	G									T	.	.	.	.	.	.	.	.	.	T		S	S								S
Template Predicted Secondary structure																																	.														.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.										.	240	.	.	.	.	.	.	.	.	.	250
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300														.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	A	L	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	.	V	K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A	E	E
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		D	G	D	A	R	G	G	A	A	L	S	I	R	H	I	T	G	K	P	I	K	F	L	G	V	G	E	K	T	E	A	L	E	P	F	H	P	D	R	I	A	S	R	I	L	G	M	G	D	V	L	S	L	I	E	D	I	E	S	K	V	D	R	A	Q	A	E	K	L	A	S
Template Known Secondary structure		S	S		S			T								T	T	T			B						S	S	S	T	T							G	G	G						S	S															T	T	T						S	S	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions