Job Description P42641 Confidence 98.85% Date Thu Jan 5 12:02:02 GMT 2012 Rank 258 Aligned Residues 141 % Identity 16% Template c2hdnJ_ PDB info PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L	L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S
Query Conservation
Alig confidence															.													.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation															.													.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template Sequence		G	I	T	I	N	T	S	H	V	E	Y	D	T	.	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	.	.	.	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	.	.	.	.	.	.
Template Known Secondary structure															.	S	S									S	S	.	.	.	.	.	.	.											T	S	S			S	S							T	T	T		S														.	.	.	.	.	.
Template Predicted Secondary structure															.													.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.								.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		271	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.								.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure									.																												.	.	.	.	.	.	.
Query SS confidence									.																												.	.	.	.	.	.	.
Query Sequence		Q	D	L	A	T	K	P	.	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	A	L	.	.	.	.	.	.	.	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	V	K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A	E	E
Query Conservation									.																												.	.	.	.	.	.	.
Alig confidence		.	.	.					.																												.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E
Template Known Secondary structure		.	.	.		T											T	T	T																					T	T	S		T	T	T														T																			S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		343	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Q	P	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	R	A	I	D
Template Known Secondary structure					G	G	G
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions