Return to main results Retrieve Phyre Job Id

Job DescriptionP42641
Confidence97.45%DateThu Jan 5 12:02:02 GMT 2012
Rank290Aligned Residues129
% Identity19%Templatec2cnwF_
PDB info PDB header:signal recognitionChain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
Resolution2.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   162.......170.........180.........190.........200.......
Predicted Secondary structure 




















..................................
Query SS confidence 













































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  VGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 




 









 

  
  

  




 
  
 
      ..................................
Alig confidence 

















........



















..................................
Template Conservation 
  

  
 




  

........
      
  
 

  
  
  
  

   
    
                  
Template Sequence  VLVVGVNGVGKTTTIAKL. . . . . . . . GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDA
Template Known Secondary structure 
STTSS........TTT





SSTTT




TTS
Template Predicted Secondary structure 




........















Template SS confidence 















































































   105....110.........120.. .......130.........140.........150.........160.........170......
 
   208.210.........220.........230...... ...240.........250.........260.........270...
Predicted Secondary structure  .........







.....










Query SS confidence  . . . . . . . . .




























. . . . .




































Query Sequence  . . . . . . . . . SFVVADIPGLIEGAAEGAGLGIRFLKHLE. . . . . RCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDL
Query Conservation  ......... 
 
 





  
     

  





.....
   

 


               
  

      
Alig confidence  .........




























.....













..











.........
Template Conservation           
 







         

  
           
    





  ..            .........
Template Sequence  VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG. . QNGLEQAKKFHE. . . . . . . . .
Template Known Secondary structure  TT
S





TT

TT


TT

..T.........
Template Predicted Secondary structure 






















...........
Template SS confidence 















































































   177..180.........190.........200.........210.........220.........230... ......240.....
 
   274.....280.........290.........300.........310....
Predicted Secondary structure 



















Query SS confidence 








































Query Sequence  ATKPRWLVFNKIDLLDKVEAEEKAKAIAEALGWEDKYYLIS
Query Conservation    
  





 

            
         

 

Alig confidence 



























.....







Template Conservation        

 




    
  
      .....  

  
 
Template Sequence  AVGLTGVIVTKLDGTAKGGVLIPIVRTL. . . . . KVPIKFVG
Template Known Secondary structure 

S
TTSS


TT.....


Template Predicted Secondary structure 











.....


Template SS confidence 








































   246...250.........260.........270... ......280.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions