Job Description P42641 Confidence 99.78% Date Thu Jan 5 12:02:02 GMT 2012 Rank 48 Aligned Residues 150 % Identity 19% Template c1zo1I_ PDB info PDB header:translation/rna Chain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex Resolution 13.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L
Query Conservation
Alig confidence																																																.																		.	.	.	.	.	.	.
Template Conservation																																																.																		.	.	.	.	.	.	.
Template Sequence		V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	E	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	.	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R	A	.	.	.	.	.	.	.	R	G	A	Q	A	T	D	I	V
Template Known Secondary structure							S	T	T	S	S	S													S	B	T	T	B							S	S						T	T	S	S		.								T	T	T			T	T	S	B		.	.	.	.	.	.	.	S	S	S	B	S		S	S
Template Predicted Secondary structure																																																.																		.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.								.	.	.	.	.	.	.	300	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.						.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	.	.	.	.	.	E	K	A	K	A	I	A	E	A	L	G	W	E	D	K	Y	Y	L	I	S	A	A
Query Conservation																																																							.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.
Template Sequence		V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	.	.	.	.	.	.	.	.	.	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K
Template Known Secondary structure							T	T	T	B	S		T	T	T										.	.	.	.	.	.	.	.	.	T	T										S	S	S	S	T	T					T	T										T	T			S	S	S								T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.										.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		317	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	L	G	V	K	D	L	C	W	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	T	G	I	D	E	L	L	D	A	I
Template Known Secondary structure		T		T	T		T	T					T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions