Job Description P42641 Confidence 99.95% Date Thu Jan 5 12:02:02 GMT 2012 Rank 11 Aligned Residues 212 % Identity 21% Template c1xzqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.																																							.	.
Query SS confidence																											.																																							.	.
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	.	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	.	.	A	G	L	G	I	R	F	L	K	H	L	E	R	C
Query Conservation																											.																																							.	.
Alig confidence																											.																		.																					.	.
Template Conservation																																													.
Template Sequence		M	V	I	V	G	K	P	N	V	G	K	S	T	L	L	N	R	L	L	N	E	D	R	A	I	V	T	D	I	P	G	T	T	R	D	V	I	S	E	E	I	V	I	.	R	G	I	L	F	R	I	V	D	T	A	G	V	R	S	E	T	N	D	L	V	E	R	L	G	I	E	R	T	L	Q	E	I	E	K	A
Template Known Secondary structure								T	T	G	G	G	S										T	B										S			S								.	T	T								S	S				S	S			S	S
Template Predicted Secondary structure																																													.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	L	L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	A	L	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Sequence		D	I	V	L	F	V	L	D	A	S	S	P	L	D	E	E	D	R	K	I	L	E	R	I	.	.	.	.	.	.	.	.	.	.	.	K	N	K	R	Y	L	V	V	I	N	K	V	D	V	V	E	K	I	N	E	.	.	.	.	E	E	I	K	N	K	L	G	T	D	R	H	M	V	K	I	S	A	L	K	G
Template Known Secondary structure		S								S	S	S													G	.	.	.	.	.	.	.	.	.	.	.	G	G	S	S									S	S				S			.	.	.	.							T	S		S	T	T						T	T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.												.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A	E	E	A	K	Q	P	E	K	V	E	F	M	W	D	D	Y	H	R	Q	Q	L	E	E	I	A	E	E	D	D	E	D	W	D	D	D	W	D	E	D	D	E	E	G	V	E	F	I	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	L	E	K	L	E	E	S	I	Y	R	E	T	Q	E	I	F	E	R	G	S	D	S	L	I	T	N	L	R	Q	K	Q	L	L	E	N	V	K	G	H	L	E	D	A	I	K	S	L	K	E	G	M	P	V	D	M	A	S	I	D	L	E	R	A	L	N	L	L	D	E
Template Known Secondary structure															T								T	T		S			S																							T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions