Job Description P42641 Confidence 100.00% Date Thu Jan 5 12:02:02 GMT 2012 Rank 1 Aligned Residues 377 % Identity 41% Template c1udxA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:the gtp-binding protein obg; PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8 Resolution 2.07 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	D	E	A	S	I	L	V	V	A	G	D	G	G	N	G	C	V	S	F	R	R	E	K	Y	I	P	K	G	G	P	D	G	G	D	G	G	D	G	G	D	V	W	M	E	A	D	E	N	L	N	T	L	I	D	Y	R	F	E	K	S	F	R	A	E	R	G	Q	N	G	A	S	R	D	C	T	G	K	R
Query Conservation
Alig confidence																																																													.
Template Conservation																																																													.
Template Sequence		F	Q	D	V	L	V	I	T	V	A	A	G	R	G	G	D	G	A	V	S	F	R	R	E	K	F	V	P	K	G	G	P	D	G	G	D	G	G	R	G	G	S	V	Y	L	R	A	R	G	S	V	D	S	L	S	R	L	S	K	.	R	T	Y	K	A	E	D	G	E	H	G	R	G	S	Q	Q	H	G	R	G
Template Known Secondary structure				S																		B			B	T	T	B	S				B																	T	T			S	S	T	T	S		S	.	S											B	T	T	T	B
Template Predicted Secondary structure																																																													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	D	V	T	I	K	V	P	V	G	T	R	V	I	D	Q	G	T	G	E	T	M	G	D	M	T	K	H	G	Q	R	L	L	V	A	K	G	G	W	H	G	L	G	N	T	R	F	K	S	S	V	N	R	T	P	R	Q	K	T	N	G	T	P	G	D	K	R	E	L	L	L	E	L	M	L	L	A	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	D	L	V	I	E	V	P	R	G	T	R	V	F	D	A	D	T	G	E	L	L	A	D	L	T	E	E	G	Q	T	V	L	V	A	R	G	G	A	G	G	R	G	N	M	H	F	V	S	P	T	R	Q	A	P	R	F	A	E	A	G	E	E	G	E	K	R	R	L	R	L	E	L	M	L	I	A	D	V
Template Known Secondary structure											S	S						T	T	T									S	T	T															G	G	G	G			S	S		S	S																						S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	V	G	Y	P	N	A	G	K	S	S	L	L	A	A	M	T	R	A	H	P	K	I	A	P	Y	P	F	T	T	L	S	P	N	L	G	V	V	E	V	S	E	E	E	R	F	T	L	A	D	I	P	G	I	I	E	G	A	S	E	G	K	G	L	G	L	E	F	L	R	H	I	A	R	T	R	V	L	L
Template Known Secondary structure							G	G	G											S	S								T	T		S	S										S	S	S															G	G	G	S			S									T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	A	L	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	V	K
Query Conservation
Alig confidence								.	.	.	.																																																				.	.	.
Template Conservation								.	.	.	.																																																				.	.	.
Template Sequence		Y	V	L	D	A	A	.	.	.	.	D	E	P	L	K	T	L	E	T	L	R	K	E	V	G	A	Y	D	P	A	L	L	R	R	P	S	L	V	A	L	N	K	V	D	L	L	E	E	E	A	V	K	A	L	A	D	A	L	A	R	E	.	.	.	G	L	A	V	L	P	V	S	A	L	T	G	A	G	L	P
Template Known Secondary structure						T	T	.	.	.	.	S																							S										T	T	S														T	T	.	.	.	T	S							T	T	T		T	T
Template Predicted Secondary structure								.	.	.	.																																																				.	.	.
Template SS confidence
		241	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A	E	E	A	K	Q	P	E	K	V	E	F	M	W	D	D	Y	H	R	Q	Q	L	E	E	I	A	E	E	D	D	E	D	W	D	D	D	W	D	E	D	D	E	E	G	V	E	F	I	Y	K	R
Query Conservation
Alig confidence																																	.	.	.
Template Conservation																																	.	.	.
Template Sequence		A	L	K	E	A	L	H	A	L	V	R	S	T	P	P	P	E	M	P	K	P	V	P	Q	A	G	V	E	V	V	P	.	.	.	V	A	E	G	V	Y	E	V	R	A	P	E	V	E	R	Y	L	A	R	I	K	G	D	L	M	E	A	A	G	Y	L	Q	E	V
Template Known Secondary structure													T	S																			.	.	.			T	T														T	T					T	G	G	G
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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