Job Description P42641 Confidence 97.86% Date Thu Jan 5 12:02:02 GMT 2012 Rank 280 Aligned Residues 140 % Identity 18% Template c1tndA_ PDB info PDB header:binding protein(gtp) Chain: A: PDB Molecule:transducin; PDBTitle: the 2.2 angstroms crystal structure of transducin-alpha complexed with2 gtp gamma s Resolution 2.20 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.								250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L	L	H	L	I	D	I	D	P	.	.	.	.	.	.	.	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence																		.									.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation																		.									.	.	.	.	.	.	.
Template Sequence		K	T	T	G	I	I	E	T	Q	F	S	F	K	D	L	N	.	F	R	M	F	D	V	G	G	.	.	.	.	.	.	.	Q	R	S	E	R	K	K	W	I	H	C	F	E	G	V	T	C	I	I	F	I	A	A	L	S	A	Y	D	M	V	L	V	E	D	D	E	V	N	R	M	H	E	S	L	H	L	F	N
Template Known Secondary structure					S									T	T			.									.	.	.	.	.	.	.	S					G	G	G	G	G	G		T	T		S								G	G	G	G	G		B		S	S		T	T	S	B
Template Predicted Secondary structure																		.									.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.								200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.																		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.									.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	A	L	.	.	.	.	.	.	.	.	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		S	I	C	N	.	H	R	Y	F	A	T	T	S	I	V	L	F	L	N	K	K	D	V	F	S	E	K	I	K	K	A	H	L	S	I	C	F	P	D	Y	N	G	P	N	T	Y	E	D	A	G	N	Y	I	K	V	Q	F	L	E	L	N	M	R	R	D	V	K	E	I	Y	S	H	M	T	C	A	T	D	T	Q
Template Known Secondary structure					T	.		S	G	G	G	S																		T	T	S		G	G	G	T		T	T			S																	T	T		T	T	B	T	T	B									T	T
Template Predicted Secondary structure						.
Template SS confidence
		248	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	K	F	V	F	D	A	V	T	D	I	I	I	K	E	N	L	K	D	C
Template Known Secondary structure																	S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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