Job Description P42641 Confidence 99.51% Date Thu Jan 5 12:02:02 GMT 2012 Rank 123 Aligned Residues 154 % Identity 20% Template c1m2oD_ PDB info PDB header:protein transport/signaling protein Chain: D: PDB Molecule:gtp-binding protein sar1; PDBTitle: crystal structure of the sec23-sar1 complex Resolution 2.50 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	K	V	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	E	K	S	F	V	V	A	D	I	P	G	L	I	E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L
Query Conservation
Alig confidence																									.	.	.																					.																.	.	.	.	.	.	.
Template Conservation																									.	.	.																					.																.	.	.	.	.	.	.
Template Sequence		L	L	F	L	G	L	D	N	A	G	K	T	T	L	L	H	M	L	K	N	D	R	L	.	.	.	A	T	L	Q	P	T	W	H	P	T	S	E	E	L	A	I	G	N	I	K	.	F	T	T	F	D	L	G	G	H	I	Q	A	R	R	L	.	.	.	.	.	.	.	W	K	D	Y	F	P	E	V	N	G	I
Template Known Secondary structure							S	T	T	S	S										T	S			.	.	.								S									S	S	S		.									S	S	G	G	G	G	T	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																									.	.	.																					.																.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.								.	.	.	.	.	.	90	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K	A	I	A	E	.	.	A	L	G	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L
Query Conservation																																																															.	.
Alig confidence																														.	.	.	.																														.	.
Template Conservation																														.	.	.	.
Template Sequence		V	F	L	V	D	A	A	D	P	E	R	F	D	E	A	R	V	E	L	D	A	L	F	N	I	A	E	L	.	.	.	.	K	D	V	P	F	V	I	L	G	N	K	I	D	A	P	N	A	V	S	E	A	E	L	R	S	A	L	G	L	L	N	T	T	G	R	P	V	E	V	F	M	C	S	V	V	M	R	N
Template Known Secondary structure							T	T		G	G	G													T		G	G	G	.	.	.	.	T	T			B			B				T	T	S	T	T											T	T		S	S						B			B			B	T	T	T	T	B
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	K	D	L	C	W	D	V	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	L	E	A	F	Q	W	L	S	Q
Template Known Secondary structure		S									T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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