Job Description P42641 Confidence 99.87% Date Thu Jan 5 12:02:02 GMT 2012 Rank 29 Aligned Residues 171 % Identity 22% Template c1kk3A_ PDB info PDB header:translation Chain: A: PDB Molecule:eif2gamma; PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+ Resolution 1.90 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																							.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	M	L	G	M	P	N	A	G	K	S	T	F	I	R	A	V	S	A	A	K	P	.	K	V	A	D	Y	P	F	T	T	L	V	P	S	L	G	V	V	R	M	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	S	F	V	V	A	D	I	P	G	L	I
Query Conservation																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																																																																																.	.
Template Sequence		I	G	M	V	G	H	V	D	H	G	K	T	T	L	T	K	A	L	T	G	V	W	T	D	S	E	E	L	R	R	G	I	T	I	K	I	G	F	A	D	A	E	I	R	R	C	P	N	C	G	R	Y	S	T	S	P	V	C	P	Y	C	G	H	E	T	E	F	V	R	R	V	S	F	I	D	A	P	G	.	.
Template Known Secondary structure						S	S	T	T	S	S										T							T	T	S	S		S	S	S													T	T	T					S	S	S	B		T	T	T			B													S	S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	A	A	E	G	A	G	L	G	I	R	F	L	K	H	L	E	R	C	R	V	L	L	H	L	I	D	I	D	P	I	D	G	T	D	P	V	E	N	A	R	I	I	I	S	E	L	E	K	Y	S	Q	D	L	A	T	K	P	R	W	L	V	F	N	K	I	D	L	L	D	K	V	E	A	E	E	K	A	K
Query Conservation
Alig confidence		.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																										.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	H	E	A	L	M	T	T	M	L	A	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	R	P	Q	T	R	E	H	L	M	A	L	Q	.	.	.	.	.	.	.	I	I	G	Q	K	N	I	I	I	A	Q	N	K	I	E	L	V	D	K	E	K	A	L	E	N	Y	R
Template Known Secondary structure		.	.	.	.	.												G	G	G		S								T	T	S		S														.	.	.	.	.	.	.			T											G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.																																										.	.	.	.	.	.	.
Template SS confidence
							93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		299	300	.	.	.	.	.					.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		A	I	A	E	A	L	G	.	.	.	.	W	E	D	K	Y	Y	L	I	S	A	A	S	G	L	G	V	K	D	L	C	W	D	V	M	T	F	I	I	E	N	P	V	V	Q	A	E	E	A	K	Q	P
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.
Template Conservation
Template Sequence		Q	I	K	E	F	I	E	G	T	V	A	E	N	A	P	I	I	P	I	S	A	L	H	G	A	N	I	D	V	L	V	K	A	I	E	D	F	I	P	T	P	K	R	D	P	N	K	P	P	K	M	L
Template Known Secondary structure								T	T	S	T	T	T	T							B	T	T	T	T	B	T												S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions