Job Description P20966 Confidence 100.00% Date Thu Jan 5 11:37:49 GMT 2012 Rank 4 Aligned Residues 341 % Identity 14% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		S	K	K	E	S	A	G	A	Y	R	H	L	L	T	G	V	S	Y	M	L	P	M	V	V	A	G	G	L	C	I	A	L	S	F	A	F	G	I	E	A	F	.	.	.	.	K	E	P	G	T	L	A	A	A	L	M	Q	I	G	G	G	S	A	F	A	L	M	V	P	V	L	A	G	Y	I	A	F	S	I	A
Query Conservation																																											.	.	.	.
Alig confidence																																											.	.	.	.
Template Conservation
Template Sequence		G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L	G
Template Known Secondary structure																		G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310																																.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.	.	340
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query Sequence		D	R	P	G	L	T	P	G	L	I	G	G	M	L	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	G	S	G	F	I	G	G	I	I	A	G	F	L	A	G	Y	I	A	K	L	I	S	T	Q	.	.	.	L	K	L	P
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P
Template Known Secondary structure					T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T																					T	T		S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.							390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		Q	S	M	E	A	L	K	P	I	L	I	I	P	L	I	S	S	L	V	V	G	L	A	M	I	Y	L	I	G	K	P	V	A	G	I	L	E	G	L	T	H	W	L	Q	T	M	G	T	A	.	.	.	.	.	.	N	A	V	L	L	G	A	I	L	G	G	M	M	C	T	D	M	G	G	P	V	N	K	A	A
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A	T
Template Known Secondary structure		T	T	S																														T	S	S	S		S									T	T	T								S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		415							.	.	.	.	420	.	.	.	.	.	.	.	.																.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure			.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	.	.	.	.	.	.	A	F	G	V	G	L	L	S	T	Q	T	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	M	A	A	I	M	A	A	G	M	V	P	P	L	A	M	G	L	A	T	M	V	A	R	R	K	F	D	K	A	Q	Q	E	G	G	K	A	A	L	V	L	G	L	C	F
Query Conservation			.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																																																														.	.
Template Sequence		I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	.	.	S	Q	Q	L	K	S	L	G	R	L	S	I	A	P	G	I	F	N
Template Known Secondary structure			T																					T	T						S										T	S		S	S	S	S	S	T													.	.	S										T	S					T	T
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		474	.	.	.	.	.	480	.			.	.	.	.	.	.	.	.	490	.			.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.							.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure										.	.											.	.																											.	.	.	.	.	.
Query SS confidence										.	.											.	.																											.	.	.	.	.	.
Query Sequence		I	S	E	G	A	I	P	F	.	.	A	A	R	D	P	M	R	V	L	P	.	.	C	C	I	V	G	G	A	L	T	G	A	I	S	M	A	I	G	A	K	L	M	A	P	H	G	G	.	.	.	.	.	.	L	F	V	L	L	I	P	G	A	I	T	P	V	L	G	Y	L	V	A	I	I	A	G	T	L	V
Query Conservation										.	.											.	.																											.	.	.	.	.	.
Alig confidence										.	.											.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q	L	V	N	F	A	L	A
Template Known Secondary structure										T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	L	A	Y	A	F	L	K	R	P	E	V	D	A	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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