 |
Job Description | P20966 | Confidence | 31.99% | Date | Thu Jan 5 11:37:49 GMT 2012 |
Rank | 108 | Aligned Residues | 123 |
% Identity | 14% | Template | c1e5dA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; |
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
|
Resolution | 2.5 Å |
|
 |
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
G | P | K | R | V | V | A | V | T | A | C | P | T | G | V | A | H | T | F | M | A | A | E | A | I | E | T | E | A | K | K | R | G | W | W | V | K | V | E | T | R | G | S | V | G | A | G | N | A | I | T | P | E | E | V | A | A | A | D | L | V | I | V | A | A | D | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|   |
|   |   |
|   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |
|
|   |
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |
|
|
|   |
|   |   | . | . |
|   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |
|
|   |   |   |   |
|   |   |   |   |   | . | . |   |   |   |   |   |   |
|   |   |   |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
P | T | N | K | V | V | I | F | Y | D | S | M | W | . |
. |
H | S | T | E | K | M | A | R | V | L | A | E | S | F | R | D | E | G | C | T | V | K | L | M | W | C | K | A | C | H | H | . |
. |
S | Q | I | M | S | E | I | S | D | A | G | A | V | I | V | G | S | P | T | H | N | N | G | I | L | P | Y | V | A | G | T | L |
Template Known Secondary structure |   |
|
| S |  |  |  |  |  |  |
|
| S | S | . | . | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | T | T | T | S |
|  | . | . |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |
|
|
| B | T | T | B |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
251 | . | . | . | . | . | . | . | . | 260 | . | . | . | |
|
. | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | |
|
. | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . |
  |
  |   |
|
169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
E | V | D | L | A | K | F | A | G | K | P | M | Y | R | T | S | T | G | L | A | L | K | K | T | A | Q | E | L | D | K | A | V | A | E | A | T | P | Y | E | P | A | G | K | A | Q | T | A | T | T | E | S | K | K | E | S | A | G | A | Y | R |
Query Conservation |   |
. |   |
|   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |
|   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|   |   |   |   |   |
Template Sequence |   |
Q | Y | I | K | G | L | R | P | Q | N | K | I | G | G | A | F | G | S | F | G | W | S | G | E | S | T | K | V | L | A | E | W | L | T | G | M | G | F | D | M | P | A | T | P | V | K | V | K | N | V | P | T | H | A | D | Y | E | Q | L | K | T |
Template Known Secondary structure |   |
 |  |  |  |  | T |
|
|
| S |
|  |  |  |  |  |  |  |  | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| B |
|
| S |
|
|  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
327 | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|