Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	F	V	S	E	R	E	I	V	R	K	I	F	S	K	K	I	D	F	T	I	L	A	F	F	Y	I	S	S	I	F	F	L	L	C	S	G	V	L	F	Q	Y	F	T	A	A	F	T	K	G	N	C	Y	E	C	S	M	K	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	Y	I	K	Q	F	Y	F	S	L	E	T	A	W	Y	L	I	S	A	V	A	V	F	I	A	S	V	F	I	Q	H	R	I	K	A	Y	L	T	L	L	A	I	T	W	I	V	L	T	I	T	D	V	A	L	I	H	A	L	D	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	A	M	N	N	I	L	L	N	I	L	Y	N	L	F	G	A	I	L	L	S	L	F	M	C	L	S	N	S	L	L	F	H	L	N	K	I	K	H	I	P	M	I	L	S	A	M	I	P	L	V	S	A	I	I	I	A	I	L	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	A	V	I	Y	L	L	F	A	R	Q	A	V	E	I	E	M	D	I	S	E	G	S	D	I	A	Y	V	G	V	K	D	N	E	E	S	F	G	F	L	N	D	K	K	T	D	T	P	T	Y	L	D	V	I	K	N	G	S	L	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Y	N	D	T	Q	G	L	S	G	A	D	I	Y	I	V	S	G	C	Y	A	L	P	D	L	L	R	N	V	P	L	D	A	K	K	S	F	L	N	V	K	K	L	E	I	T	Q	K	L	P	M	M	G	F	I	Q	G	E	S	A	D
Secondary structure
SS confidence
Disorder																																												?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	M	P	K	A	A	S	R	L	S	L	S	K	Q	D	D	K	F	M	L	A	S	S	V	T	D	S	Q	I	K	F	K	S	N	N	A	Q	L	M	V	A	F	A	F	M	P	I	T	T	N	G	I	L	H	D	Y	T	Y	D	I
Secondary structure
SS confidence
Disorder				?	?		?	?		?	?	?	?														?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	I	N	D	K	K	Y	K	I	E	N	H	V	A	P	L	S	R	L	D	K	N	K	K	M	K	C	E	Y	Q	Q	I	S	D	L	T	N	T	Y	N	I	N	A	N	Y	L	T	G	F	L	L	V	L	K	P	D	D	I	I	N
Secondary structure
SS confidence
Disorder											?							?		?	?	?		?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		Y	N	N	S	P	S	V	L	L	K	T	D	F	A	F	Y	K	K	T	Y	Q	K	L	D	K	I	Y	D	D	I	S	N	G	K	L	S	S	L	R	A	T	G	I	S	Q	F	S	I	N	G	K	H	L	S	L	R	P	E	S	E
Secondary structure
SS confidence
Disorder																																				?			?		?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		I	I	I	S	E	G	S	L	Y	G	L	V	N	K	S	K	K	I	K	I	Y	G	T	A	D	L	V	F	V	D	N	K	I	M	N	L	R	K	I	T	Y	L	Q	S	K	L	E	I	F	G	S	S	I	M	D	I	L	K	Y	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Sequence		F	G	L	G	L	L	A	I	S	I	K	F	I	H	S	Y	F	K	N	D	V	N	E	N	L	F	L
Secondary structure
SS confidence
Disorder																									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1l6s chain A Region: 194 - 261 Aligned: 47 Modelled: 52 Confidence: 48.1% Identity: 36% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) Phyre2 PDB 1yew chain F Region: 136 - 239 Aligned: 79 Modelled: 89 Confidence: 26.0% Identity: 30% PDB header:oxidoreductase, membrane protein Chain: F: PDB Molecule:particulate methane monooxygenase, a subunit; PDBTitle: crystal structure of particulate methane monooxygenase Phyre2 PDB 3chx chain F Region: 136 - 239 Aligned: 79 Modelled: 89 Confidence: 25.3% Identity: 24% PDB header:membrane protein Chain: F: PDB Molecule:pmoa; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) Phyre2 PDB 3l4c chain B Region: 340 - 371 Aligned: 28 Modelled: 32 Confidence: 20.0% Identity: 39% PDB header:cell adhesion, cell invasion, apoptosis Chain: B: PDB Molecule:dedicator of cytokinesis protein 1; PDBTitle: structural basis of membrane-targeting by dock180 Phyre2 PDB 1zik chain B Region: 365 - 379 Aligned: 15 Modelled: 15 Confidence: 19.6% Identity: 60% PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16lys in the dimeric2 state Phyre2 PDB 1zik chain A Region: 365 - 379 Aligned: 15 Modelled: 15 Confidence: 19.2% Identity: 60% PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16lys in the dimeric2 state Phyre2 PDB 1x6a chain A domain 2 Region: 480 - 496 Aligned: 17 Modelled: 17 Confidence: 18.9% Identity: 35% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1wyy chain B Region: 440 - 461 Aligned: 21 Modelled: 22 Confidence: 17.9% Identity: 29% PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein Phyre2 PDB 2goh chain A Region: 166 - 191 Aligned: 26 Modelled: 17 Confidence: 17.3% Identity: 35% PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles Phyre2 PDB 1pje chain A Region: 166 - 191 Aligned: 26 Modelled: 17 Confidence: 17.3% Identity: 35% PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u"(vpu) from hiv-1 Phyre2 PDB 1pi8 chain A Region: 166 - 191 Aligned: 26 Modelled: 19 Confidence: 17.3% Identity: 35% PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1 Phyre2 PDB 1pi7 chain A Region: 166 - 191 Aligned: 26 Modelled: 19 Confidence: 17.3% Identity: 35% PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1 Phyre2 PDB 2gof chain A Region: 166 - 191 Aligned: 26 Modelled: 17 Confidence: 17.3% Identity: 35% PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles Phyre2 PDB 2vpv chain A Region: 462 - 513 Aligned: 47 Modelled: 52 Confidence: 16.7% Identity: 19% PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p Phyre2 PDB 1zii chain B Region: 366 - 379 Aligned: 14 Modelled: 14 Confidence: 14.8% Identity: 57% PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the dimeric2 state Phyre2 PDB 1zii chain A Region: 366 - 379 Aligned: 14 Modelled: 14 Confidence: 14.8% Identity: 57% PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the dimeric2 state Phyre2 PDB 3mhv chain C Region: 244 - 252 Aligned: 9 Modelled: 9 Confidence: 14.6% Identity: 67% PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of vps4 and vta1 Phyre2 PDB 1zij chain A Region: 366 - 379 Aligned: 14 Modelled: 14 Confidence: 14.5% Identity: 57% PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the trimeric2 state Phyre2 PDB 1u24 chain A Region: 451 - 483 Aligned: 33 Modelled: 33 Confidence: 14.5% Identity: 30% PDB header:hydrolase Chain: A: PDB Molecule:myo-inositol hexaphosphate phosphohydrolase; PDBTitle: crystal structure of selenomonas ruminantium phytase Phyre2 PDB 2dzo chain D Region: 244 - 252 Aligned: 9 Modelled: 9 Confidence: 14.2% Identity: 56% PDB header:protein binding Chain: D: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: crystal structure analysis of yeast nas6p complexed with2 the proteasome subunit, rpt3 Phyre2 1 d1l6sa_ 2 c1yewF_ 3 c3chxF_ 4 c3l4cB_ 5 c1zikB_ 6 c1zikA_ 7 d1x6aa2 8 c1wyyB_ 9 c2gohA_ 10 c1pjeA_ 11 c1pi8A_ 12 c1pi7A_ 13 c2gofA_ 14 c2vpvA_ 15 c1ziiB_ 16 c1ziiA_ 17 c3mhvC_ 18 c1zijA_ 19 c1u24A_ 20 c2dzoD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1l6sa_ 48.1 36 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 2 c1yewF_ 26.0 30 PDB header:oxidoreductase, membrane protein Chain: F: PDB Molecule:particulate methane monooxygenase, a subunit; PDBTitle: crystal structure of particulate methane monooxygenase 3 c3chxF_ 25.3 24 PDB header:membrane protein Chain: F: PDB Molecule:pmoa; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 4 c3l4cB_ 20.0 39 PDB header:cell adhesion, cell invasion, apoptosis Chain: B: PDB Molecule:dedicator of cytokinesis protein 1; PDBTitle: structural basis of membrane-targeting by dock180 5 c1zikB_ 19.6 60 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16lys in the dimeric2 state 6 c1zikA_ 19.2 60 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16lys in the dimeric2 state 7 d1x6aa2 18.9 35 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 8 c1wyyB_ 17.9 29 PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein 9 c2gohA_ 17.3 35 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles 10 c1pjeA_ 17.3 35 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u"(vpu) from hiv-1 11 c1pi8A_ 17.3 35 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1 12 c1pi7A_ 17.3 35 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1 13 c2gofA_ 17.3 35 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles 14 c2vpvA_ 16.7 19 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 15 c1ziiB_ 14.8 57 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the dimeric2 state 16 c1ziiA_ 14.8 57 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the dimeric2 state 17 c3mhvC_ 14.6 67 PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of vps4 and vta1 18 c1zijA_ 14.5 57 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the trimeric2 state 19 c1u24A_ 14.5 30 PDB header:hydrolase Chain: A: PDB Molecule:myo-inositol hexaphosphate phosphohydrolase; PDBTitle: crystal structure of selenomonas ruminantium phytase 20 c2dzoD_ 14.2 56 PDB header:protein binding Chain: D: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: crystal structure analysis of yeast nas6p complexed with2 the proteasome subunit, rpt3 21 c1no7A_ not modelled 14.2 21 PDB header:viral protein Chain: A: PDB Molecule:major capsid protein; PDBTitle: structure of the large protease resistant upper domain of2 vp5, the major capsid protein of herpes simplex virus-1 22 d1no7a_ not modelled 14.2 21 Fold:Major capsid protein VP5 Superfamily:Major capsid protein VP5 Family:Major capsid protein VP5 23 d1vh3a_ not modelled 14.2 26 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 24 c1zijC_ not modelled 14.1 57 PDB header:leucine zipper Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the trimeric2 state 25 c1zijB_ not modelled 13.7 57 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the trimeric2 state 26 d1ou5a2 not modelled 13.6 37 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 27 c1piqA_ not modelled 13.3 47 PDB header:dna binding protein Chain: A: PDB Molecule:protein (general control protein gcn4-piq); PDBTitle: crystal structure of gcn4-piq, a trimeric coiled coil with buried2 polar residues 28 c2dvwB_ not modelled 13.2 56 PDB header:cell cycle/protein-binding Chain: B: PDB Molecule:26s protease regulatory subunit 6b; PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome 29 c3nicA_ not modelled 13.1 44 PDB header:hydrolase/dna Chain: A: PDB Molecule:eco29kir; PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f 30 c3jycA_ not modelled 13.0 13 PDB header:metal transport Chain: A: PDB Molecule:inward-rectifier k+ channel kir2.2; PDBTitle: crystal structure of the eukaryotic strong inward-rectifier2 k+ channel kir2.2 at 3.1 angstrom resolution 31 d1vfga2 not modelled 12.8 37 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 32 d2r8ca1 not modelled 12.8 25 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Zn-dependent arginine carboxypeptidase-like 33 c1w5jB_ not modelled 12.7 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 34 c1w5jD_ not modelled 12.7 47 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 35 c1w5jA_ not modelled 12.7 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 36 c1w5jC_ not modelled 12.7 47 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 37 c2voyG_ not modelled 12.6 38 PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 38 d1vi7a2 not modelled 11.9 50 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:YigZ C-terminal domain-like 39 c3hriF_ not modelled 11.7 20 PDB header:ligase Chain: F: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase (apo) from trypanosoma brucei 40 d1kmma2 not modelled 11.6 22 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 41 c1gclA_ not modelled 11.5 47 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 42 c1gcmA_ not modelled 11.5 47 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 43 d1bg3a2 not modelled 11.3 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 44 c1uo3B_ not modelled 11.2 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 45 c1zilA_ not modelled 11.2 53 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the dimeric2 state 46 d1ayra2 not modelled 11.2 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like 47 c1gclD_ not modelled 11.1 47 PDB header:leucine zipper Chain: D: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 48 c1gclB_ not modelled 11.1 47 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 49 c1gclC_ not modelled 11.1 47 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 50 c1unuB_ not modelled 11.1 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 51 c1unuA_ not modelled 11.1 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 52 c1uo5A_ not modelled 11.0 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 53 c1uo5B_ not modelled 11.0 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 54 c1unxA_ not modelled 11.0 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 55 c1zimA_ not modelled 10.9 53 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state 56 c2ahpB_ not modelled 10.8 53 PDB header:de novo protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys 57 c1zilB_ not modelled 10.8 53 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the dimeric2 state 58 c1gcmB_ not modelled 10.8 47 PDB header:transcription regulation Chain: B: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 59 d2pt0a1 not modelled 10.7 34 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA 60 c1w5iA_ not modelled 10.7 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 61 c1uo2A_ not modelled 10.7 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 62 c1untA_ not modelled 10.7 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 63 c1ld4E_ not modelled 10.6 53 PDB header:virus Chain: E: PDB Molecule:general control protein gcn4; PDBTitle: placement of the structural proteins in sindbis virus 64 c2ahpA_ not modelled 10.6 53 PDB header:de novo protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys 65 c3t47A_ not modelled 10.5 53 PDB header:immune system Chain: A: PDB Molecule:scin-d; PDBTitle: crystal structure of truncated form of staphylococcal complement2 inhibitor d (scin-d) at 1.3 angstrom 66 c1gcmC_ not modelled 10.5 47 PDB header:transcription regulation Chain: C: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 67 c1uo1B_ not modelled 10.5 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 68 c1uo1A_ not modelled 10.5 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 69 c1zimB_ not modelled 10.5 53 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state 70 c1zimC_ not modelled 10.5 53 PDB header:leucine zipper Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state 71 c1unwB_ not modelled 10.4 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 72 c1uo0A_ not modelled 10.4 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 73 c1uo0B_ not modelled 10.4 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 74 c1w5iB_ not modelled 10.4 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 75 c1uo2B_ not modelled 10.4 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 76 c1untB_ not modelled 10.4 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 77 d1ejxc1 not modelled 10.4 25 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:alpha-Subunit of urease 78 c3m4wH_ not modelled 10.4 100 PDB header:signaling protein/signaling protein Chain: H: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: structural basis for the negative regulation of bacterial stress2 response by rseb 79 c2hdlA_ not modelled 10.3 42 PDB header:cytokine Chain: A: PDB Molecule:small inducible cytokine b14; PDBTitle: solution structure of brak/cxcl14 80 c1unyB_ not modelled 10.3 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 81 d1tsfa_ not modelled 10.2 33 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:RNase P subunit p29-like 82 c3iabA_ not modelled 10.2 24 PDB header:hydrolase/rna Chain: A: PDB Molecule:ribonucleases p/mrp protein subunit pop6; PDBTitle: crystal structure of rnase p /rnase mrp proteins pop6, pop72 in a complex with the p3 domain of rnase mrp rna 83 d1m7ja1 not modelled 10.2 16 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:D-aminoacylase 84 d2chha1 not modelled 10.1 32 Fold:Calcium-mediated lectin Superfamily:Calcium-mediated lectin Family:Calcium-mediated lectin 85 c1swiC_ not modelled 10.1 53 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 86 c1unxB_ not modelled 10.0 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 87 d1miwa2 not modelled 10.0 53 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 88 c2ztaA_ not modelled 9.9 53 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4 leucine zipper; PDBTitle: x-ray structure of the gcn4 leucine zipper, a two-stranded,2 parallel coiled coil 89 c2ztaB_ not modelled 9.9 53 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4 leucine zipper; PDBTitle: x-ray structure of the gcn4 leucine zipper, a two-stranded,2 parallel coiled coil 90 d1r11a3 not modelled 9.9 44 Fold:MutS N-terminal domain-like Superfamily:tRNA-intron endonuclease N-terminal domain-like Family:tRNA-intron endonuclease N-terminal domain-like 91 c1u9fA_ not modelled 9.8 46 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 92 c1ij2A_ not modelled 9.8 53 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 93 d1ts9a_ not modelled 9.8 36 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:RNase P subunit p29-like 94 c1rb4C_ not modelled 9.7 53 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 95 d1dl6a_ not modelled 9.6 38 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 96 c1swiB_ not modelled 9.5 53 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 97 c1rb1C_ not modelled 9.5 53 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 98 c3k7zC_ not modelled 9.5 53 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 99 c1p0gA_ not modelled 9.5 39 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: structure of antimicrobial peptide, hp (2-20) and its2 analogues derived from helicobacter pylori, as determined3 by 1h nmr spectroscopy

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0