Job Description P0AAX8 Confidence 100.00% Date Thu Jan 5 11:14:05 GMT 2012 Rank 1 Aligned Residues 162 % Identity 28% Template c1y7mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution Resolution 2.05 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	I	T	I	P	E	G	N	T	Q	P	L	E	Y	F	A	A	E	Y	Q	M	G	L	S	N	M	M	E	A	N	P	G	V	D	T	F	L	P	K	G	G	T	V	L	N	I	P	Q	Q	L	I	L	P	D	T	V	H	E	G	I	V	I	N	S	A	E	M	R	L	Y	Y	Y	P	K	G	T	N	T	V
Query Conservation
Alig confidence												.	.																											.																					.														.
Template Conservation												.	.																											.																					.														.
Template Sequence		L	T	Y	Q	V	K	Q	G	D	T	.	.	L	N	S	I	A	A	D	F	R	I	S	T	A	A	L	L	Q	A	N	P	S	L	Q	A	G	L	.	T	A	G	Q	S	I	V	I	P	G	L	P	D	P	Y	T	I	P	Y	H	.	I	A	V	S	I	G	A	K	T	L	T	L	S	.	L	N	N	R	V	X
Template Known Secondary structure								T	T			.	.								T	T			B	T	T	B	T	T	T	S		T	T		S	S		.		T	T						T	T				G	G	G	S				.					T	T	T	T						.		T	T
Template Predicted Secondary structure												.	.																											.																					.														.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		I	V	L	P	I	G	I	G	Q	L	G	K	D	T	P	I	N	W	T	T	K	V	E	R	K	K	A	G	P	T	W	T	P	T	A	K	M	H	A	E	Y	R	A	A	G	E	P	L	P	A	V	V	P	A	G	P	D	N	P	M	G	L	Y	A	L	Y	I	G	.	R	L	Y	A	I	H	G	T	N	A	N
Query Conservation																																																																						.
Alig confidence																					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	Y	P	I	A	V	G	K	I	L	T	Q	T	P	T	G	E	F	.	Y	I	I	N	R	Q	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	G	P	F	G	A	Y	W	L	S	L	S	A	A	H	Y	G	I	H	G	T	N	N	P
Template Known Secondary structure							B			B	T	T	B								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T	T						S	S	T	T							S		G
Template Predicted Secondary structure																					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.																												.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	I	G	L	R	V	S	H	G	C	V	R	L	R	N	E	D	I	K	F	L	F	E	K	V	P	V	G	T	R	V	Q	F	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	I	G	K	A	V	S	K	G	C	I	R	X	H	N	K	D	V	I	E	L	A	S	I	V	P	N	G	T	R	V	T	I	N	R
Template Known Secondary structure		G	G	T	T	S				S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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