Phyre 2 alignment of P37685 with d1ad3a

Job Description P37685
Confidence 100.00% Date Thu Jan 5 11:57:00 GMT 2012

Rank 37 Aligned Residues 430

% Identity 27% Template d1ad3a_

SCOP info ALDH-like ALDH-like ALDH-like

Resolution 2.60

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	D	L	A	L	D	A	A	H	K	V	K	D	K	W	A	H	T	S	V	Q	D	R	A	A	I	L	F	K	I	A	D	R	M	E	Q	N	L	E	L	L	A	T	A	E	T	W	D	N	G	K	P	I	R	E	T	S	A	A	D	V	P	L	A	I	D	H	F	R	Y	F	A	S	C	I	R	A	Q	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	S	D	T	V	K	R	A	R	E	A	F	N	S	G	K	T	R	S	L	Q	F	R	I	Q	Q	L	E	A	L	Q	R	M	I	N	E	N	L	K	S	I	S	G	A	L	A	S	D	L	G	K	N	E	W	T	S	Y	Y	E	E	V	A	H	V	L	E	E	L	D	T	T	I	K	E	L	P	D	W	A	E
Template Known Secondary structure														T	T	G	G	G																																										T																				S
Template Predicted Secondary structure
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	144	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence	G	I	S	E	V	D	.	.	.	.	S	E	T	V	A	Y	H	F	H	E	P	L	G	V	V	G	Q	I	I	P	W	N	F	P	L	L	M	A	S	W	K	M	A	P	A	L	A	A	G	N	C	V	V	L	K	P	A	R	L	T	P	L	S	V	L	L	L	M	E	I	V	G	D	L	L	P	P	G	V	V
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.
Template Conservation
Template Sequence	D	E	P	V	A	K	T	R	Q	T	Q	Q	D	D	L	Y	I	H	S	E	P	L	G	V	V	L	V	I	G	A	W	N	Y	P	F	N	L	T	I	Q	P	M	V	G	A	V	A	A	G	N	A	V	I	L	K	P	S	E	V	S	G	H	M	A	D	L	L	A	T	L	I	P	Q	Y	M	D	Q	N	L	Y
Template Known Secondary structure								S	T	T	T	T	S										S								S	S	S	T	T													T	T									S	T	T															S		T	T	T
Template Predicted Secondary structure
Template SS confidence
	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	V	V	N	G	A	G	G	V	I	G	E	Y	L	A	T	S	K	R	I	A	K	V	A	F	T	G	S	T	E	V	G	Q	Q	I	M	Q	Y	A	T	Q	N	I	I	P	V	T	L	E	L	G	G	K	S	P	N	I	F	F	A	D	V	M	D	E	E	D	A	F	F	D	K	A	L	E	G	F	A	L	F
Query Conservation
Alig confidence															.	.																																														.	.	.	.	.	.
Template Conservation															.	.																																														.	.	.	.	.	.
Template Sequence	L	V	V	K	G	G	V	P	E	T	T	E	L	L	.	.	K	E	R	F	D	H	I	M	Y	T	G	S	T	A	V	G	K	I	V	M	A	A	A	A	K	H	L	T	P	V	T	L	E	L	G	G	K	S	P	C	Y	V	D	K	D	.	.	.	.	.	.	C	D	L	D	V	A	C	R	R	I	A	W	G
Template Known Secondary structure						S								T	.	.	T	S			S						S														T	T	T																	S	S	.	.	.	.	.	.	S
Template Predicted Secondary structure															.	.																																														.	.	.	.	.	.
Template SS confidence
	163	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.							.	.	.	.	.	.	.	.	230	.	.	.	.

	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence	A	F	.	N	Q	G	E	V	C	T	C	P	S	R	A	L	V	Q	E	S	I	Y	E	R	F	M	E	R	A	I	R	R	V	E	S	I	R	S	G	N	P	L	D	S	V	T	Q	M	G	A	Q	V	S	H	G	Q	L	E	T	I	L	N	Y	I	D	I	G	K	K	E	G	A	D	V	L	T	G	G	R	R
Query Conservation			.
Alig confidence			.																																			.																											.	.	.	.	.
Template Conservation																																						.																											.	.	.	.	.
Template Sequence	K	F	M	N	S	G	Q	T	C	V	A	P	D	Y	I	L	C	D	P	S	I	Q	N	Q	I	V	E	K	L	K	K	S	L	K	D	F	Y	.	G	E	D	A	K	Q	S	R	D	Y	G	R	I	I	N	D	R	H	F	Q	R	V	K	G	L	I	.	.	.	.	.	D	N	Q	K	V	A	H	G	G	T	W
Template Known Secondary structure			T	T	T	T			T	T	S								G	G	G																	.		S		G	G	G		T	T	S				S											T	T	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																						.																											.	.	.	.	.
Template SS confidence
	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.

	379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	L	L	E	G	E	L	K	D	G	Y	Y	L	E	P	T	I	L	F	G	Q	N	N	M	R	V	F	Q	E	E	I	F	G	P	V	L	A	V	T	T	F	K	T	M	E	E	A	L	E	L	A	N	D	T	Q	Y	G	L	G	A	G	V	W	S	R	N	G	N	L	A	Y	K	M	G	R	G	I	Q	A	G
Query Conservation
Alig confidence	.	.	.	.	.
Template Conservation	.	.	.	.	.
Template Sequence	.	.	.	.	.	D	Q	S	S	R	Y	I	A	P	T	I	L	V	D	V	D	P	Q	S	P	V	M	Q	E	E	I	F	G	P	V	M	P	I	V	C	V	R	S	L	E	E	A	I	Q	F	I	N	Q	R	E	K	P	L	A	L	Y	V	F	S	N	N	E	K	V	I	K	K	M	I	A	E	T	S	S	G
Template Known Secondary structure	.	.	.	.	.		T	T	T	T									S			T	T	S	G	G	G	T	S				S	S								S	S										T	S				S							S										T	T				S
Template Predicted Secondary structure	.	.	.	.	.
Template SS confidence
						309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

	459	460	.	.	.	.	.	.	.			.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.			.	.	.	.	.	.	510	.	.
Predicted Secondary structure										.	.																																					.	.
Query SS confidence										.	.																																					.	.
Query Sequence	R	V	W	T	N	C	Y	H	A	.	.	Y	P	A	H	A	A	F	G	G	Y	K	Q	S	G	I	G	R	E	T	H	K	M	M	L	E	H	Y	Q	Q	T	K	C	L	L	V	S	.	.	Y	S	D	K	P	L	G	L	F
Query Conservation										.	.																																					.	.
Alig confidence										.	.																																					.	.
Template Conservation
Template Sequence	G	V	T	A	N	D	V	I	V	H	I	T	V	P	T	L	P	F	G	G	V	G	N	S	G	M	G	A	Y	H	G	K	K	S	F	E	T	F	S	H	R	R	S	C	L	V	K	S	L	L	N	E	E	A	H	K	A	R
Template Known Secondary structure					S	S	S	S	G	G	G	G		T	T	S						G	G	G						S	T							T																T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
	384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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