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Job DescriptionP37685
Confidence100.00%DateThu Jan 5 11:57:00 GMT 2012
Rank40Aligned Residues425
% Identity25%Templatec3lnsD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   58.60.........70.........80.........90.........100.........110.........120.........130.......
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Query Sequence  SSGKRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETSAADVPLAIDHFRYFASC
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Template Conservation    
   
  
   
  
   
       
   
      
      
      
 

    
   

      
      
Template Sequence  YLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLHEIDFALAH
Template Known Secondary structure 


TTTT
STT


T
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   138.140.........150 .........160.........170.........180.........190.........200.........210...
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Query Sequence  IRAQEGGISEVDS. . . . ETVAYHFHEPLGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEIVGDL
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Template Sequence  LDEWVAPVSVPSPDIIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLIGAIIGGNTCIIKPSETTPETSAVIEKIIAEA
Template Known Secondary structure  TS



GGG
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SSSTTTT


TT
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   214.....220.........230.........240.........250.........260.........270.........280.........290...
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Query Sequence  LPPGVVNVVNGAGGVIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKAL
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Template Sequence  FAPEYVAVIQGG. RDENSHLLSLP. FDFIFFTGSPNVGKVVMQAAAKHLTPVVLELGGKCPLIVLPD. . . . . . ADLDQTV
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TTT



.TS
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TTT






TT......

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   163......170.... .....180..... ....190.........200.........210.........220....... ..230....
 
   294.....300.........310.........320.........330.........340.........350.........360.........370...
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Query Sequence  EGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSVTQMGAQVSHGQLETILNYIDIGKKEGADVL
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Template Sequence  NQLMFGKFINSGQTIAPDYLYVHYSVKDALLERLVE. . . . . RVKTELPEINSTGKLVTERQVQRLVSLLEAT. . . QGQVL
Template Known Secondary structure  GGGG



GGG.....

STTTT


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   235....240.........250.........260.........270 .........280.........290.........300. .....
 
   374.....380.........390.........400.........410.........420.........430. ........440.........450..
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Query Sequence  TGGRRKLLEGELKDGYYLEPTILFGQNNMRVFQEEIFGPVLAVTTFKTMEEALELAND. TQYGLGAGVWSRNGNLAYKMG
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Template Sequence  VGSQA. . . . . DVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGII
Template Known Secondary structure 


.....GGGT

S

TTSGGGSS


SSS
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   308.310.. .......320.........330.........340.........350.........360.........370.........380..
 
   453......460...... ...470.........480.........490.........500...
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Query Sequence  RGIQAGRVWTNCYH. . AYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVS
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Template Sequence  NQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSVRIV
Template Known Secondary structure  TS

SS

SGGGG
TTS
B


GGG

BST
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   383......390.........400.........410.........420.........430.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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