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Job DescriptionP37685
Confidence100.00%DateThu Jan 5 11:57:00 GMT 2012
Rank21Aligned Residues469
% Identity33%Templatec3ifgH_
PDB info PDB header:oxidoreductaseChain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.........100...
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Query Sequence  RYDNFIGGEWVAPADGEYYQNLTPVTGQLLCEVASSGKRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLEL
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Template Sequence  RHQAYIGGEWQAADSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDD
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STT

TT


TTT


B
S
T
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   12.......20.........30.........40.........50.........60.........70.........80.........90.
 
   104.....110.........120.........130.........140......... 150.........160.........170.........180..
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Query Sequence  LATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVD. SETVAYHFHEPLGVVGQIIPWNFPLLMASWKMA
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Template Sequence  LALILTTEQGKPLAEAK. GEIAYAASFIEWFAEEGKRVAGDTLPTPDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVG
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.TT




SSTT



SSSTT
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   92.......100........ .110.........120.........130.........140.........150.........160.........170
 
   183......190.........200.........210.... .....220.........230.........240.........250.........260.
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Query Sequence  PALAAGNCVVLKPARLTPLSVLLLMEIVGDLL. PPGVVNVVNGAGGVIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQN
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Template Sequence  PALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSAPT
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SS
T

BTT

B

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TGGG
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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   262.......270.........280.........290.........300. ........310.........320.........330.........340
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Query Sequence  IIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFAF. NQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPL
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Template Sequence  VKKLTLELGGNAPFIVFDD. . . . . . ADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVYDAFADKLAAAVSKLKVGRGT
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TT......

SGGGG
STT
GGGTS
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   251........260......... 270.........280.........290.........300.........310.........320....
 
   341........350.........360.........370.........380.........390.........400.........410.........420
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Query Sequence  DSVTQMGAQVSHGQLETILNYIDIGKKEGADVLTGGRRKLLEGELKDGYYLEPTILFGQNNMRVFQEEIFGPVLAVTTFK
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Template Sequence  ESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRH. . . . ALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFA
Template Known Secondary structure  STT

B


SST


SB
....TT
TT
B


TTSGGGTS


SS
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   325....330.........340.........350.........360... ......370.........380.........390.........400
 
   421........430.........440.........450.........460.........470.........480.........490.........500
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Query Sequence  TMEEALELANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCL
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Template Sequence  SEEELVRLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIKYL
Template Known Secondary structure 

SS

S





SS
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SSS
B

SGGGS
BSTTTTTGGG
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   401........410.........420.........430.........440.........450.........460.........470.........480
 
   501..
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Query Sequence  LVS
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Template Sequence  CVA
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   481..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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