Job Description P30136 Confidence 57.94% Date Thu Jan 5 11:45:53 GMT 2012 Rank 89 Aligned Residues 143 % Identity 18% Template c2yxgD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.							.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.
Query Sequence		L	V	K	V	N	A	N	I	G	N	S	A	V	T	S	S	I	E	E	E	V	E	K	L	V	W	S	T	R	W	G	A	D	T	V	M	D	L	S	.	.	.	.	.	.	T	G	R	Y	I	H	E	T	R	E	W	I	L	R	N	S	P	V	P	I	G	T	V	P	I	Y	Q	A	L	E	K	V	N	G	I
Query Conservation																																									.	.	.	.	.	.
Alig confidence											.	.	.	.																											.	.	.	.	.	.																						.	.	.										.	.
Template Conservation											.	.	.	.																																																						.	.	.										.	.
Template Sequence		R	V	Q	V	I	A	G	A	G	.	.	.	.	S	N	C	T	E	E	A	I	E	L	S	V	F	A	E	D	V	G	A	D	A	V	L	S	I	T	P	Y	Y	N	K	P	T	Q	E	G	L	R	K	H	F	G	K	V	A	E	S	I	N	L	P	I	V	.	.	.	L	Y	N	V	P	S	R	T	A	.	.
Template Known Secondary structure		S	S								.	.	.	.		S	S															T		S									S	S																			S	S				.	.	.									S	.	.
Template Predicted Secondary structure											.	.	.	.																																																						.	.	.										.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.							.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																																																.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.
Query Sequence		A	E	D	L	T	W	E	A	F	R	D	T	L	L	E	Q	A	E	Q	G	V	D	Y	F	T	I	H	A	G	V	L	L	R	Y	V	P	M	T	A	K	R	L	T	G	I	V	S	R	G	G	S	I	M	A	K	W	C	L	S	H	H	Q	.	.	.	.	.	.	E	N	F	L	Y	Q	H	F	R	E	I	C
Query Conservation																																																																.	.	.	.	.	.
Alig confidence		.																.	.																																													.	.	.	.	.	.
Template Conservation		.																.	.
Template Sequence		.	V	N	L	E	P	K	T	V	K	L	L	A	E	E	Y	.	.	S	N	I	S	A	V	K	E	A	N	P	N	L	S	Q	V	S	E	L	I	H	D	A	K	I	T	V	L	S	G	N	D	E	L	T	L	P	I	I	A	L	G	G	K	G	V	I	S	V	V	A	N	I	V	P	K	E	F	V	E	M	V
Template Known Secondary structure		.																.	.	T	T									S												T							S	S	G	G	G								T							S	G	G	G	T
Template Predicted Secondary structure		.																.	.
Template SS confidence
			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		381	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	C	A	A	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Y	A	L	E	G	D
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions