Job Description P30136 Confidence 79.84% Date Thu Jan 5 11:45:53 GMT 2012 Rank 29 Aligned Residues 188 % Identity 19% Template c2y0fD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																						.
Query SS confidence																										.	.	.	.																						.
Query Sequence		N	S	A	V	T	S	S	I	E	E	E	V	E	K	L	V	W	S	T	R	W	G	A	D	.	.	.	.	T	V	M	D	L	S	T	G	R	Y	I	H	E	T	R	E	W	I	L	R	N	.	S	P	V	P	I	G	T	V	P	I	Y	Q	A	L	E	K	V	N	G	I	A	E	D	L	T	W	E	A	F	R
Query Conservation																										.	.	.	.																						.
Alig confidence																										.	.	.	.																						.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	T	P	T	R	D	V	E	A	T	T	A	Q	V	L	E	L	H	R	A	G	S	E	I	V	R	L	T	V	N	D	E	E	A	A	K	A	V	P	E	I	K	R	R	L	L	A	E	G	V	E	V	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	D	F	H	F	N	G	H	L	L	L
Template Known Secondary structure				S		T	T															T	T		S								S					T	T											T	T						.	.	.	.	.	.	.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.														.	.	.	.	.	90	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	L	L	E	Q	A	E	Q	G	V	D	Y	F	T	I	H	A	G	V	L	L	R	Y	V	P	M	T	A	K	R	L	T	G	I	V	S	R	G	G	S	I	M	A	K	W	C	L	S	H	H	Q	E	N	F	L	Y	Q	H	F	R	E	I	C	E	I	C	A	A	Y	D	V	S	L	S	L	G	D	G	L
Query Conservation
Alig confidence						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		R	K	Y	P	.	K	M	A	E	A	L	D	K	F	R	I	N	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	F	A	E	M	I	R	I	A	M	D	L	G	K	P	V	R	I	.	.	G	A
Template Known Secondary structure						.							S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T									T	T	T						.	.
Template Predicted Secondary structure						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		97	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.																																								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.
		397	.	.	400	.	.	.	.																	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.			420	.	.	.	.	.	.	.	.	.				430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.											.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.											.	.	.
Query Sequence		R	P	G	S	I	Q	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	E	A	Q	F	A	E	L	H	T	L	G	E	L	.	.	T	K	I	A	W	E	Y	D	V	Q	.	.	.	V	M	I	E	G	P	G	H	V	P	M	Q	M	I	R	R	N	M	T	E	E	L	E	H	C	H
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.											.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.											.	.	.																									.	.
Template Conservation																																																																																.	.
Template Sequence		N	W	G	S	L	D	P	A	L	L	T	E	L	M	D	R	N	A	S	R	P	E	P	K	S	A	H	E	V	V	L	E	A	L	V	E	S	A	V	R	A	Y	E	A	A	L	E	M	G	L	G	E	D	K	L	V	L	S	A	K	V	S	K	A	R	D	L	V	W	V	Y	R	E	L	A	R	R	T	.	.
Template Known Secondary structure			G	G	G	S															S	S	S																														G	G	G							B	S	S																.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		E	A	P	F	Y	T	L	G	P	L	T	T	D	I	A	P	G	Y	D	H	F	T	.	S	G	I	G	A	A	M	I	G	W	F	G
Query Conservation																								.
Alig confidence									.	.	.													.
Template Conservation									.	.	.
Template Sequence		Q	A	P	L	H	L	G	.	.	.	L	T	E	A	G	M	G	V	K	G	I	V	A	S	A	A	A	L	A	P	L	L	L	E	G
Template Known Secondary structure			S		B				.	.	.	B					S	S																		T
Template Predicted Secondary structure									.	.	.
Template SS confidence
		223	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions