Return to main results Retrieve Phyre Job Id

Job DescriptionP06709
Confidence95.89%DateThu Jan 5 10:59:19 GMT 2012
Rank123Aligned Residues56
% Identity11%Templated1lj9a_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........
Predicted Secondary structure 

















Query SS confidence 























































Query Sequence  NTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYS
Query Conservation        

  
  
   

  

  




 



 
  
   
  
 
    

 
Alig confidence 























































Template Conservation 
  
   
  
      
  


  
 
   


  
  
   
 
 
     
 
Template Sequence  TRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKK
Template Known Secondary structure  TTTSTTT

TTS
SS
TT
Template Predicted Secondary structure 














Template SS confidence 























































   2930.........40.........50.........60.........70.........80....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions