Job Description P06709 Confidence 95.01% Date Thu Jan 5 10:59:19 GMT 2012 Rank 155 Aligned Residues 90 % Identity 16% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.															60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	P	L	K	L	I	A	L	L	A	N	G	E	F	H	S	G	E	Q	L	G	E	T	L	G	M	S	R	A	A	I	N	K	H	I	Q	T	L	R	D	W	G	V	D	V	F	T	V	P	G	K	G	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	E	P	I	Q	L	L	N	A	K
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.																													.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.																													.
Template Sequence		S	T	R	Q	R	I	V	E	L	A	H	S	G	.	.	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	.	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	P	S	I	F	A	W
Template Known Secondary structure													T	T	.	.											T																	S	.			S					S					S	S	S																T	T
Template Predicted Secondary structure															.	.																													.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	L	G	Q	L	D	G	G	S	V	A	V	L	P	V	I	D	S	T	N	Q	Y	L	L	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	R	D	R	L	L	S	E	G	V	C	T	N	D	N	I	P	S	V	S	S	I	N	R	V	L
Template Known Secondary structure										T	T	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions