Job Description P06709 Confidence 97.72% Date Thu Jan 5 10:59:19 GMT 2012 Rank 25 Aligned Residues 142 % Identity 16% Template c3bwgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 Resolution 2.09 Å

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		14	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																																																										.	.	.
Query SS confidence									.																																																										.	.	.
Query Sequence		L	A	N	G	E	F	H	.	S	G	E	Q	L	G	E	T	L	G	M	S	R	A	A	I	N	K	H	I	Q	T	L	R	D	W	G	V	D	V	F	T	V	P	G	K	G	Y	S	L	P	E	P	I	Q	L	L	N	A	K	Q	I	L	G	Q	L	D	.	.	.	G	G	S	V	A	V	L	P	V	I	D	S
Query Conservation									.																																																										.	.	.
Alig confidence									.																													.																													.	.	.
Template Conservation																																						.
Template Sequence		L	Q	Q	G	D	K	L	P	V	L	E	T	L	X	A	Q	F	E	V	S	K	S	T	I	T	K	S	L	E	L	L	E	Q	K	G	A	.	I	F	Q	V	R	G	S	G	I	F	V	R	K	H	K	R	K	G	Y	I	S	L	L	S	N	Q	G	D	F	N	V	T	S	K	V	I	E	L	D	V	R	K	P
Template Known Secondary structure				T	T		B											T	T																T	T	S	.					T	T	T											S				S	S	G	G	G
Template Predicted Secondary structure																																						.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	Q	Y	L	L	D	R	I	G	E	L	K	S	G	D	A	C	I	A	E	Y	Q	Q	A	G	R	G	R	R	G	R	K	W	F	S	P	F	G	A	N	L	Y	L	S	M	F	W	R	L	E	Q	G	P	A	A	A	I	G	L	S	L	V	I	G	I	V	M	A	E	V	L	R	K	L	G	A	D	K	V
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Sequence		T	P	E	A	A	E	N	L	N	I	G	X	D	E	D	I	Y	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	K	R	V	R	Y	I	N	G	Q	T	L	C	Y	E	E	S	Y	Y	T	K	S	I	V	T	Y	L	N	N	E	I	V	S	H	.	.	S	I	F	H	Y	I	R	E	G	L	G	L	K	I
Template Known Secondary structure										T			T	T	S						.	.	.	.	.	.	.	.	.	.	.	.							T	T												T	T	T	S									T	S	.	.									T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.													.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170
		170
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		171

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions