Job Description P45470 Confidence 100.00% Date Thu Jan 5 12:02:47 GMT 2012 Rank 3 Aligned Residues 170 % Identity 30% Template c3uk7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d Resolution 2.05 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.															.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	K	I	A	V	L	I	T	D	E	F	E	D	S	E	F	T	S	P	A	D	E	F	R	K	A	G	H	E	V	I	T	I	E	K	Q	A	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	K	G	K	K	G	E	A	S	V	T	I	D	K	S	I	D	E	V	T	P	A	E	F	D
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	T	V	L	I	L	C	G	D	Y	X	E	D	Y	E	V	X	V	P	F	Q	A	L	Q	A	F	G	I	T	V	H	T	V	C	P	G	K	K	A	G	D	S	C	P	T	A	V	H	D	F	C	G	H	Q	T	Y	F	E	S	R	G	H	N	F	T	L	N	A	T	F	D	E	V	D	L	S	K	Y	D
Template Known Secondary structure											T	T																T	T								T	T			T	T											S	S	S	S	S													S		G	G	G			G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		A	L	L	L	P	G	G	H	S	P	D	Y	L	R	G	D	N	R	F	V	T	F	T	R	D	F	V	N	S	G	K	P	V	F	A	I	C	H	G	P	Q	L	L	I	S	A	D	V	I	R	G	R	K	L	T	A	V	K	P	I	I	I	D	V	K	N	A	G	A	E	F	Y	D	Q	E	.	.	.	V	V
Query Conservation																																																																													.	.	.
Alig confidence																																			.																																										.	.	.
Template Conservation																																			.
Template Sequence		G	L	V	I	P	G	G	R	A	P	E	Y	L	A	L	T	A	S	V	V	E	L	V	K	E	F	S	R	S	G	K	P	I	.	A	S	I	H	G	Q	L	I	L	A	A	A	D	T	V	N	G	R	K	C	T	A	Y	A	T	V	G	P	S	L	V	A	A	G	A	K	W	V	E	P	I	T	P	D	V	C
Template Known Secondary structure								B	T						T	T														T	T				.					T								T			T	T							G	G	G							T	T							S	S	T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	K	D	Q	L	V	T	S	R	T	P	D	D	L	P	A	F	N	R	E	A	L	R	L	L	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	D	G	S	L	I	T	A	A	T	Y	E	G	H	P	E	F	I	Q	L	F	V	K	A	L	G	G
Template Known Secondary structure					T	T					S	S	G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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