Job Description P45470 Confidence 100.00% Date Thu Jan 5 12:02:47 GMT 2012 Rank 22 Aligned Residues 165 % Identity 12% Template c3er6D_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus Resolution 1.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.
Query Sequence		K	I	A	V	L	I	T	D	E	F	E	D	S	E	F	T	S	P	A	D	E	F	R	K	A	G	.	.	.	.	.	.	.	H	E	V	I	T	I	E	K	Q	A	G	K	T	V	K	G	K	K	G	E	A	S	V	T	I	D	K	S	I	D	E	V	T	P	A	E	F	D	A	L	L	L	P	G	G	H	S
Query Conservation																												.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.												.	.
Template Conservation																																														.	.
Template Sequence		R	V	V	A	L	A	P	T	G	R	Y	F	A	S	I	I	S	S	L	E	I	L	E	T	A	A	E	F	A	E	F	Q	G	F	M	T	H	V	V	T	P	N	N	R	.	.	P	L	I	G	R	G	G	I	S	V	Q	P	T	A	Q	W	Q	S	F	D	F	T	N	I	L	I	I	G	S	I	G	D	P	L
Template Known Secondary structure										T	T	S																		T	T											T	T	S		.	.					T	T	S						S	S		G	G	G		S			S								S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		P	D	Y	L	R	G	D	N	R	F	V	T	F	T	R	D	F	V	N	S	G	K	P	V	F	A	I	C	H	G	P	Q	L	L	I	S	A	D	V	I	R	G	R	K	L	T	A	V	K	P	I	I	I	D	V	K	N	A	.	.	G	A	E	F	Y	D	Q	E	V	V	V	D	K	D	Q	L	V	T	S	R
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		E	S	L	D	K	I	D	P	A	L	F	D	W	I	R	E	L	H	L	K	G	S	K	I	V	A	I	D	T	G	I	F	V	V	A	K	A	G	L	L	Q	Q	N	K	A	V	M	H	S	Y	F	A	H	L	F	G	E	L	F	P	E	I	M	L	M	T	E	Q	K	A	L	I	D	G	N	V	Y	L	S	S
Template Known Secondary structure				G	G	G	S														T	T							T	T									T			T	T																		T	T	S				T	T		S					T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	D	D	L	P	A	F	N	R	E	A	L	R	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	Y	S	H	S	S	V	M	L	E	I	V	E	E	Y
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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