Job Description P77376 Confidence 100.00% Date Thu Jan 5 12:28:19 GMT 2012 Rank 14 Aligned Residues 318 % Identity 22% Template c3q2kB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca Resolution 2.13 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		D	N	I	R	V	G	L	I	G	Y	G	Y	A	S	K	T	F	H	A	P	L	I	A	G	T	P	G	Q	E	L	A	V	I	S	S	S	D	E	T	K	V	K	.	.	A	D	W	P	T	V	T	V	V	S	E	P	K	H	L	F	N	D	P	N	I	D	L	I	V	I	P	T	P	N	D	T	H	F	P	L
Query Conservation																																												.	.
Alig confidence																																												.	.
Template Conservation
Template Sequence		R	K	I	R	F	G	L	V	G	C	G	R	I	S	K	N	H	I	G	A	I	A	Q	H	G	D	R	A	E	L	V	E	I	C	D	T	N	P	E	A	L	Q	A	A	E	A	A	T	G	A	R	P	F	S	S	L	S	D	M	L	A	Q	G	N	A	D	A	L	V	L	A	T	P	S	G	L	H	P	W	Q
Template Known Secondary structure												S	T	T									T	T		T	T	T									S	S														B			S	S											S						S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	K	A	A	L	E	A	G	K	H	V	V	V	D	K	P	F	T	V	T	L	S	Q	A	R	E	L	D	A	L	A	K	S	L	G	R	V	L	S	V	F	H	N	R	R	W	D	S	D	F	L	T	L	K	G	L	L	A	E	G	V	L	G	E	V	A	Y	F	E	S	H	F	D	R	F	R	P	Q	V	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		A	I	E	V	A	Q	A	G	R	H	V	V	S	E	K	P	M	A	T	R	W	E	D	G	K	R	M	V	K	A	C	D	E	A	G	V	R	L	F	V	V	K	Q	N	R	R	N	A	T	L	Q	L	V	K	K	A	I	E	Q	G	R	F	G	R	I	Y	M	V	T	V	N	V	F	W	T	R	P	Q	E	Y
Template Known Secondary structure								T	T							S	S	S		S	S															T								G	G	G	G													T	T	T	T		S											B
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																																														.
Query SS confidence		.	.																																																																														.
Query Sequence		.	.	R	D	R	W	R	E	Q	G	G	P	G	S	G	I	W	Y	D	L	A	P	H	L	L	D	Q	A	I	T	L	F	G	L	P	V	S	M	T	V	D	L	A	Q	L	R	P	G	A	Q	S	T	D	Y	F	H	A	I	L	S	Y	P	Q	R	R	V	I	L	H	G	T	M	L	A	A	A	E	S	A	.
Query Conservation		.	.																																																																														.
Alig confidence		.	.																																																																														.
Template Conservation
Template Sequence		Y	D	A	A	R	W	R	G	K	W	E	W	D	G	G	A	F	M	N	Q	A	S	H	Y	V	D	L	L	D	W	L	V	G	P	V	E	S	V	Y	A	Y	T	A	T	L	A	R	R	I	E	A	E	D	T	G	V	A	A	L	R	W	R	H	G	A	M	G	S	I	N	V	T	M	L	T	Y	P	Q	N	L
Template Known Secondary structure			T	T	S	T	T	T	T		T	T	T	T								T																								S	S	S	S	S	S	S		S									T	T	S									S	B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
				237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	Y	I	V	H	G	S	R	G	S	Y	V	K	Y	G	L	D	P	Q	E	E	R	L	K	N	G	E	R	L	P	Q	E	D	W	G	Y	D	M	R	D	G	V	L	T	R	V	E	G	E	E	R	V	E	E	T	L	L	T	V	P	G	N	Y	P	A	Y	Y	A	A	I	R	D	A	L	N	G	D	G
Query Conservation		.	.
Alig confidence		.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	S	I	T	I	L	G	E	K	G	T	V	R	V	G	G	V	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	I	D	E	W	K	F	A	E	P	H	P	D	D	D	K	F	G	H	P	L	Y	Y	D	N	V	I	N	C	L	R	G	D	C
Template Known Secondary structure										S	S							T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S			G	G	G																		T	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.																										.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	P	V	P	A	S	Q	A	I	Q	V	M	E	L	I	E	L	G	I	E	S	A	K	H	R	A	T	L	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	E	T	D	G	R	E	G	L	Q	S	L	A	L	L	T	A	I	Y	R	S	A	R	D	G	V	R	I	P	L
Template Known Secondary structure				S	S	B																						S				S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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