Job Description P77376 Confidence 100.00% Date Thu Jan 5 12:28:19 GMT 2012 Rank 9 Aligned Residues 336 % Identity 18% Template c3oqbF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110 Resolution 2.60 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20								.	.	.	.	.	.	.	.	.	30	.	.	.	.										.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence																			.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		N	I	R	V	G	L	I	G	Y	G	Y	A	S	K	T	F	H	.	.	.	.	.	.	.	A	P	L	I	A	G	T	P	G	Q	E	L	A	V	.	.	.	.	.	.	.	.	.	I	S	S	S	D	E	T	K	V	K	.	.	.	A	D	W	P	T	V	T	V	V	S	E	P	K	H	L	F	N	D	P	N
Query Conservation																			.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence																			.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		T	Q	R	L	G	L	I	X	N	G	V	T	G	R	X	G	L	N	Q	H	L	I	R	S	I	V	A	I	R	D	Q	G	G	V	R	L	K	N	G	D	R	I	X	P	D	P	I	L	V	G	R	S	A	E	K	V	E	A	L	A	K	R	F	N	I	A	R	W	T	T	D	L	D	A	A	L	A	D	K	N
Template Known Secondary structure											S	T	T	S						T	T	T	T	T	T								T	S				T	T	S												S													T						S									T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	L	I	V	I	P	T	P	N	D	T	H	F	P	L	A	K	A	A	L	E	A	G	K	H	V	V	V	D	K	P	F	T	V	T	L	S	Q	A	R	E	L	D	A	L	A	K	S	L	G	R	V	L	S	V	F	H	N	R	R	W	D	S	D	F	L	T	L	K	G	L	L	A	E	G	V	L	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	X	F	F	D	A	A	T	T	Q	A	R	P	G	L	L	T	Q	A	I	N	A	G	K	H	V	Y	C	E	K	P	I	A	T	N	F	E	E	A	L	E	V	V	K	L	A	N	S	K	G	V	K	H	G	T	V	Q	D	K	L	F	L	P	G	L	K	K	I	A	F	L	R	D	S	G	F	F	G	R
Template Known Secondary structure									S		T	T	T										T	T	T							S		S		S	S															T								G	G	G	G	S												T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.											.	.
Predicted Secondary structure														.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	Y	F	E	S	H	F	D	R	F	R	.	.	.	.	.	.	P	Q	V	R	D	R	W	R	E	Q	G	G	P	G	S	G	I	W	Y	D	L	A	P	H	L	L	D	Q	A	I	T	L	F	G	L	P	V	S	M	T	V	D	L	A	Q	L	R	P	G	A	.	.	.	.	.	.	.	.	.	.	Q	S
Query Conservation														.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	S	V	R	G	E	F	G	Y	W	V	F	E	G	G	W	Q	E	A	Q	R	P	S	W	N	Y	R	D	E	D	G	G	G	I	I	L	D	X	V	C	H	W	R	Y	V	L	D	N	L	F	G	N	V	Q	S	V	V	C	I	G	N	T	D	I	P	E	R	F	D	E	Q	G	K	K	Y	K	A	T	A
Template Known Secondary structure																S	S	S	S			S	S		G	G	G	G		G	G	G	T																			T															S					T	T	S							S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																														.	.	.	.
Query SS confidence																														.	.	.	.
Query Sequence		T	D	Y	F	H	A	I	L	S	Y	P	Q	R	R	V	I	L	H	G	T	M	L	A	A	A	E	S	A	.	.	.	.	R	Y	I	V	H	G	S	R	G	S	Y	V	K	Y	G	L	D	P	Q	E	E	R	L	K	N	G	E	R	L	P	Q	E	D	W	G	Y	D	M	R	D	G	V	L	T	R	V	E	G
Query Conservation																														.	.	.	.
Alig confidence																														.	.	.	.
Template Conservation
Template Sequence		D	D	S	A	Y	A	T	F	Q	L	E	G	G	V	I	A	H	I	N	X	S	W	V	T	R	V	Y	R	D	D	L	V	T	F	Q	V	D	G	T	H	G	S	A	V	A	G	L	S	D	C	X	I	Q	A	R	Q	A	T	P	R	P	V	W	N	P	K	R	L	H	D	F	Y	G	D	W	Q	K	L	P	D
Template Known Secondary structure												T	T	T									S	S					S	S	S	S								S	S							S	S							G	G	G														G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	R	V	E	E	T	L	L	T	V	P	G	N	Y	P	A	Y	Y	A	A	I	R	D	A	L	N	G	D	G	E	N	P	V	P	A	S	Q	A	I	Q	V	M	E	L	I	E	L	G	I	E	S	A	K	H	R	A	T	L	C	L	A
Query Conservation
Alig confidence			.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		N	.	.	.	.	.	.	.	V	S	Y	D	N	G	F	K	E	Q	W	E	X	F	I	R	H	V	Y	E	D	A	P	Y	K	F	T	L	L	E	G	A	K	G	V	Q	L	A	E	C	A	L	K	S	W	K	E	R	R	W	I	D	V	A
Template Known Secondary structure			.	.	.	.	.	.	.	S																										S																					T	S
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		326								.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions