Job Description P77376 Confidence 95.11% Date Thu Jan 5 12:28:19 GMT 2012 Rank 438 Aligned Residues 80 % Identity 18% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.												.	.	.	.	.
Query SS confidence																																										.	.	.												.	.	.	.	.
Query Sequence		I	R	V	G	L	I	G	Y	G	Y	A	S	K	T	F	H	A	P	L	I	A	G	T	P	G	Q	E	L	A	V	I	S	S	S	D	E	T	K	V	K	.	.	.	A	D	W	P	T	V	T	V	V	S	E	.	.	.	.	.	P	K	H	L	F	N	D	P	N	I	D	L	I	V	I	P	T	P	N	D	T
Query Conservation																																										.	.	.												.	.	.	.	.
Alig confidence																.									.						.											.	.	.												.	.	.	.	.
Template Conservation																.									.						.
Template Sequence		M	K	V	I	I	I	G	G	E	T	T	A	Y	Y	.	L	A	R	S	M	L	S	R	.	K	Y	G	V	V	.	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V	I	L	T	P	R	D	E
Template Known Secondary structure																.								T	.	T					.				S												S	S	S					S		T	T	S								T			T	T								S
Template Predicted Secondary structure																.									.						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.		.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	P	L	A	K	A	A	L	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	L	F	I	A	Q	L	V	M	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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