Job Description P77376 Confidence 100.00% Date Thu Jan 5 12:28:19 GMT 2012 Rank 33 Aligned Residues 311 % Identity 17% Template c3ip3D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, putative; PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima Resolution 2.14 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.														.	.	.						.
Query SS confidence																														.	.														.	.	.						.
Query Sequence		N	I	R	V	G	L	I	G	Y	G	Y	A	S	K	T	F	H	A	P	L	I	A	G	T	P	G	Q	E	.	.	L	A	V	I	S	S	S	D	E	T	K	V	K	.	.	.	A	D	W	P	T	.	V	T	V	V	S	E	P	K	H	L	F	N	D	P	N	I	D	L	I	V	I	P	T	P	N	D	T	H
Query Conservation																														.	.														.	.	.						.
Alig confidence																	.													.	.														.	.	.						.
Template Conservation																	.
Template Sequence		S	L	K	I	C	V	I	G	S	S	G	H	F	R	Y	.	A	L	E	G	L	D	E	E	C	S	I	T	G	I	A	P	G	V	P	E	E	D	L	S	K	L	E	K	A	I	S	E	X	N	I	K	P	K	K	Y	N	N	W	W	E	X	L	E	K	E	K	P	D	I	L	V	I	N	T	V	F	S	L	N
Template Known Secondary structure										S	S	S		T			.			T	T			T	T									S	S	T	T												T	T	T							S												S						S	S
Template Predicted Secondary structure																	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		F	P	L	A	K	A	A	L	E	A	G	K	H	V	V	V	D	K	P	F	T	V	T	L	S	Q	A	R	E	L	D	A	L	A	K	S	L	G	.	.	R	V	L	S	V	F	H	N	R	R	W	D	S	D	F	L	T	L	K	G	L	L	A	E	G	V	L	G	E	V	A	Y	F	E	S	H	F	D	R	F
Query Conservation																																								.	.
Alig confidence																																								.	.
Template Conservation
Template Sequence		G	K	I	L	L	E	A	L	E	R	K	I	H	A	F	V	E	K	P	I	A	T	T	F	E	D	L	E	K	I	R	S	V	Y	Q	K	V	R	N	E	V	F	F	T	A	X	F	G	I	R	Y	R	P	H	F	L	T	A	K	K	L	V	S	E	G	A	V	G	E	I	R	L	V	N	T	Q	K	S	Y	K
Template Known Secondary structure											T	T							S	S	S		S	S															T	T	T								G	G	G	G	S												T	T	T	T		S										B	B
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																					.													.	.
Query SS confidence																																					.													.	.
Query Sequence		R	P	Q	V	R	D	R	W	R	E	Q	G	G	P	G	S	G	I	W	Y	D	L	A	P	H	L	L	D	Q	A	I	T	L	F	G	.	L	P	V	S	M	T	V	D	L	A	Q	L	.	.	R	P	G	A	Q	S	T	D	Y	F	H	A	I	L	S	Y	P	Q	R	R	V	I	L	H	G	T	M	L	A	A
Query Conservation																																					.													.	.
Alig confidence					.																																.													.	.
Template Conservation					.
Template Sequence		L	G	Q	.	R	P	D	F	Y	K	K	R	E	T	Y	G	G	T	I	P	W	V	G	I	H	A	I	D	W	I	H	W	I	T	G	K	K	F	L	S	V	Y	A	T	H	S	R	L	H	N	S	G	H	G	E	L	E	T	T	A	L	C	H	F	T	L	E	N	E	V	F	A	S	L	S	I	D	Y	L	R
Template Known Secondary structure					.			G	G	G	G	S											T	T																									S	S		T	T		T	T			S									G	G	G									S	B
Template Predicted Secondary structure					.
Template SS confidence
		160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		233	.	.	.							.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.
Query Sequence		A	E	S	A	.	.	.	.	.	.	R	Y	I	V	H	G	S	R	G	S	Y	V	K	Y	G	L	D	P	Q	E	E	R	L	K	N	G	E	R	L	P	Q	E	D	W	G	Y	D	M	R	D	G	V	L	T	R	V	E	G	E	E	R	V	E	E	T	L	L	T	V	P	G	N	Y	P	A	Y	Y	A	A	I
Query Conservation						.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	G	A	P	T	H	D	D	D	R	X	R	I	V	G	T	R	G	I	V	E	V	I	N	E	R	V	F	L	T	D	E	K	G	H	R	E	V	P	L	V	E	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	F	E	D	F
Template Known Secondary structure			T	T	S	S	S	S	B									S	S							T	T							T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																														.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	A	L	N	G	D	G	E	N	P	V	P	A	S	Q	A	I	Q	V	M	E	L	I	E	L	G	I	E	S	A	K	H	R	A	T	L	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	E	I	R	G	Q	G	K	C	X	V	T	P	E	D	S	I	L	T	T	E	I	A	L	K	A	R	L	S	A	D	T	G	Q	I	V	L	I
Template Known Secondary structure						T	T	S	S			S	S																						T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions