Job Description P77376 Confidence 100.00% Date Thu Jan 5 12:28:19 GMT 2012 Rank 18 Aligned Residues 334 % Identity 18% Template c3dtyA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae Resolution 2.04 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.						.	.	.	.	.
Predicted Secondary structure															.	.	.																						.											.	.	.								.	.											.	.	.	.	.
Query SS confidence															.	.	.																						.											.	.	.								.	.											.	.	.	.	.
Query Sequence		M	S	D	N	I	R	V	G	L	I	G	Y	G	.	.	.	Y	A	S	K	T	F	H	A	P	L	I	A	G	T	P	G	Q	E	L	A	V	.	I	S	S	S	D	E	T	K	V	K	.	.	.	A	D	W	P	T	V	T	.	.	V	V	S	E	P	K	H	L	F	N	.	.	.	.	.	D	P	N	I	D
Query Conservation															.	.	.																						.											.	.	.								.	.											.	.	.	.	.
Alig confidence															.	.	.						.																.											.	.	.								.	.											.	.	.	.	.
Template Conservation																							.
Template Sequence		I	P	Q	P	I	R	W	A	X	V	G	G	G	S	Q	S	Q	I	G	Y	I	.	H	R	C	A	A	L	R	D	N	T	F	V	L	V	A	G	A	F	D	I	D	P	I	R	G	S	A	F	G	E	Q	L	G	V	D	S	E	R	C	Y	A	D	Y	L	S	X	F	E	Q	E	A	R	R	A	D	G	I	Q
Template Known Secondary structure		S		S											T	T		S	S				.							G	G	G	S										S	S											T	T			G	G	G	B		S	S									T	T		T	T			S
Template Predicted Secondary structure																							.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	V	I	P	T	P	N	D	T	H	F	P	L	A	K	A	A	L	E	A	G	K	H	V	V	V	D	K	P	F	T	V	T	L	S	Q	A	R	E	L	D	A	L	A	K	S	L	G	R	V	L	S	V	F	H	N	R	R	W	D	S	D	F	L	T	L	K	G	L	L	A	E	G	V	L	G	E	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	S	I	A	T	P	N	G	T	H	Y	S	I	T	K	A	A	L	E	A	G	L	H	V	V	C	E	K	P	L	C	F	T	V	E	Q	A	E	N	L	R	E	L	S	H	K	H	N	R	I	V	G	V	T	Y	G	Y	A	G	H	Q	L	I	E	Q	A	R	E	X	I	A	A	G	E	L	G	D	V	R
Template Known Secondary structure							S		G	G	G											T	T							S		S		S															T	T								G	G	G	G	S												T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																														.	.													.
Query SS confidence																																														.	.													.
Query Sequence		Y	F	E	S	H	F	D	R	F	R	P	Q	V	R	D	R	W	R	E	Q	G	G	P	G	S	G	I	W	Y	D	L	A	P	H	L	L	D	Q	A	I	T	L	F	G	.	.	L	P	V	S	M	T	V	D	L	A	Q	L	.	R	P	G	A	Q	S	T	D	Y	F	H	A	I	L	S	Y	P	Q	R	R	V
Query Conservation																																														.	.													.
Alig confidence										.	.	.	.	.	.	.	.	.																												.	.													.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence		X	V	H	X	Q	F	A	H	.	.	.	.	.	.	.	.	.	G	F	H	S	A	G	P	S	Y	V	L	G	D	V	G	T	H	P	L	Y	L	S	E	V	X	L	P	D	L	K	I	K	R	L	X	C	S	R	Q	S	F	V	A	S	R	A	P	L	E	D	N	A	Y	T	L	X	E	Y	E	G	G	A	X
Template Known Secondary structure										.	.	.	.	.	.	.	.	.		T	T						S					T	T												T	T													S	S	G	G	G	T	T	S		S									T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.										.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		I	L	H	G	T	M	L	A	A	A	.	.	.	E	S	A	R	Y	I	V	H	G	S	R	G	S	Y	V	K	Y	G	L	D	P	Q	E	E	R	L	K	N	G	E	R	L	P	Q	E	D	W	G	Y	D	M	R	D	G	V	L	T	R	V	E	G	E	E	R	V	E	E	T	L	L	T	V	P	G	N	Y	P
Query Conservation												.	.	.
Alig confidence												.	.	.																																																											.
Template Conservation																																																																									.
Template Sequence		G	X	V	W	S	S	A	V	N	A	G	S	X	H	G	Q	K	I	R	V	I	G	S	R	A	S	L	E	W	W	D	E	R	P	N	Q	L	S	F	E	V	Q	G	Q	P	A	Q	I	L	E	R	G	X	G	Y	L	H	P	N	A	L	I	D	D	R	I	G	G	G	H	P	.	E	G	L	F	E	A	W	A
Template Known Secondary structure								S			T	T		S										S	S							T	T	S	T	T							T	T	S							T	T		T	T	S		G	G	G	T	T	T			S		T	T	S		.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.
		301	.	.	.	.	.	.	.	.										310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																		.
Query SS confidence											.	.	.	.	.	.	.	.	.																																		.
Query Sequence		A	Y	Y	A	A	I	R	D	A	.	.	.	.	.	.	.	.	.	L	N	G	D	G	E	N	P	V	P	A	S	Q	A	I	Q	V	M	E	L	I	E	L	G	I	E	S	A	K	H	R	A	T	.	L	C	L
Query Conservation											.	.	.	.	.	.	.	.	.																																		.
Alig confidence											.	.	.	.	.	.	.	.	.																																		.
Template Conservation
Template Sequence		N	L	Y	Y	R	F	A	L	A	X	D	A	T	D	R	S	D	T	Q	A	L	S	A	V	R	Y	P	G	I	D	A	G	V	E	G	V	R	W	V	E	R	C	V	L	S	A	D	N	D	S	I	W	V	A	Y
Template Known Secondary structure																T	T							T																									T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions