Return to main results Retrieve Phyre Job Id

Job DescriptionP77376
Confidence98.57%DateThu Jan 5 12:28:19 GMT 2012
Rank98Aligned Residues122
% Identity19%Templatec3ckyA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:2-hydroxymethyl glutarate dehydrogenase; PDBTitle: structural and kinetic properties of a beta-hydroxyacid dehydrogenase2 involved in nicotinate fermentation
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40..... ....50.........60.........70.........80..
Predicted Secondary structure 










.













Query SS confidence 









































.




































Query Sequence  NIRVGLIGYGYASKTFHAPLIAGTPGQELAVISSSDETKVKA. DWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAK
Query Conservation   


 


 
      
   
       



 
        .            


    

 
 
 

   
     
Alig confidence 














.







.




.










.

















..
















Template Conservation   


 


 
 

  .

  
   .
  
 .  
        
   
     
  
    
..
 
 
 
          
Template Sequence  SIKIGFIGLGAMGKP. MAINLLKE. GVTVY. AFDLMEANVAAVVAQGAQACENNQKVAAAS. . DIIFTSLPNAGIVETVM
Template Known Secondary structure 




TT.T.T
.
SSTTT

SS
..S

SS
Template Predicted Secondary structure 




.
.

.








..




Template SS confidence 















































































   4.....10........ .20...... ...30. ........40.........50.........60. ........70........
 
   83.... ..90.........100.........110.........120.........130..
Predicted Secondary structure 
.......















Query SS confidence 




. . . . . . .












































Query Sequence  AALEA. . . . . . . GKHVVVDKPFTVTLSQARELDALAKSLGRVLSVFHNRRWDSDFLT
Query Conservation   

  .......

 

 


 
    
   
            
    
  
    
Alig confidence 




.......






..



































Template Conservation                 
   ..

                    
             
Template Sequence  NGPGGVLSACKAGTVIVDM. . SSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEA
Template Known Secondary structure  STT
S
TT

..



TT


S
Template Predicted Secondary structure 





..


















Template SS confidence 
























































   7980.........90....... ..100.........110.........120.........130...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions